Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SF3A1Q15459 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SF3A1Q15459 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.29■■□□□ 1
SF3A1Q15459 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.29■■□□□ 1
SF3A1Q15459 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC21.29■■□□□ 1
SF3A1Q15459 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
SF3A1Q15459 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.29■■□□□ 1
SF3A1Q15459 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.29■■□□□ 1
SF3A1Q15459 AL023284.2-201ENST00000405850 579 ntBASIC21.29■■□□□ 1
SF3A1Q15459 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.29■■□□□ 1
SF3A1Q15459 CRYGFP-201ENST00000418459 633 ntBASIC21.29■■□□□ 1
SF3A1Q15459 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.29■■□□□ 1
SF3A1Q15459 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.29■■□□□ 1
SF3A1Q15459 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.29■■□□□ 1
SF3A1Q15459 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.29■■□□□ 1
SF3A1Q15459 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.29■■□□□ 1
SF3A1Q15459 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.29■■□□□ 1
SF3A1Q15459 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.29■■□□□ 1
SF3A1Q15459 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC21.28■■□□□ 1
SF3A1Q15459 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.28■■□□□ 1
SF3A1Q15459 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
SF3A1Q15459 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
SF3A1Q15459 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.28■■□□□ 1
SF3A1Q15459 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.28■■□□□ 1
SF3A1Q15459 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC21.28■■□□□ 1
SF3A1Q15459 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.28■■□□□ 1
SF3A1Q15459 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.28■■□□□ 1
SF3A1Q15459 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.28■■□□□ 1
SF3A1Q15459 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.28■■□□□ 1
SF3A1Q15459 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.28■■□□□ 1
SF3A1Q15459 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.28■■□□□ 1
SF3A1Q15459 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.28■■□□□ 1
SF3A1Q15459 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.28■■□□□ 1
SF3A1Q15459 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
SF3A1Q15459 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
SF3A1Q15459 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SF3A1Q15459 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.27■■□□□ 1
SF3A1Q15459 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SF3A1Q15459 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
SF3A1Q15459 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SF3A1Q15459 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.27■■□□□ 1
SF3A1Q15459 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SF3A1Q15459 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
SF3A1Q15459 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
SF3A1Q15459 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SF3A1Q15459 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SF3A1Q15459 AC008550.1-201ENST00000511500 884 ntBASIC21.27■■□□□ 1
SF3A1Q15459 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.27■■□□□ 1
SF3A1Q15459 AP003071.4-201ENST00000562276 1284 ntBASIC21.27■■□□□ 1
SF3A1Q15459 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.27■■□□□ 1
SF3A1Q15459 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
SF3A1Q15459 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.27■■□□□ 1
SF3A1Q15459 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SF3A1Q15459 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
SF3A1Q15459 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.27■■□□□ 1
SF3A1Q15459 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SF3A1Q15459 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.27■■□□□ 1
SF3A1Q15459 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.27■■□□□ 1
SF3A1Q15459 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
SF3A1Q15459 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SF3A1Q15459 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SF3A1Q15459 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.26■□□□□ 0.99
SF3A1Q15459 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.26■□□□□ 0.99
SF3A1Q15459 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SF3A1Q15459 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.26■□□□□ 0.99
SF3A1Q15459 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.26■□□□□ 0.99
SF3A1Q15459 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
SF3A1Q15459 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.26■□□□□ 0.99
SF3A1Q15459 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SF3A1Q15459 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.26■□□□□ 0.99
SF3A1Q15459 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.26■□□□□ 0.99
SF3A1Q15459 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.26■□□□□ 0.99
SF3A1Q15459 TMEM191A-211ENST00000637163 1067 ntBASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms