Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC11.36□□□□□ -0.59
HSPG2P98160 MTDHP4-201ENST00000600287 670 ntBASIC11.36□□□□□ -0.59
HSPG2P98160 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
HSPG2P98160 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
HSPG2P98160 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC11.36□□□□□ -0.59
HSPG2P98160 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
HSPG2P98160 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC11.35□□□□□ -0.59
HSPG2P98160 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
HSPG2P98160 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
HSPG2P98160 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC11.35□□□□□ -0.59
HSPG2P98160 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC11.35□□□□□ -0.59
HSPG2P98160 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC11.35□□□□□ -0.59
HSPG2P98160 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC11.35□□□□□ -0.59
HSPG2P98160 IGLL3P-201ENST00000412472 434 ntBASIC11.35□□□□□ -0.59
HSPG2P98160 MAL2-202ENST00000531508 892 ntTSL 3 BASIC11.35□□□□□ -0.59
HSPG2P98160 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC11.35□□□□□ -0.59
HSPG2P98160 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
HSPG2P98160 AC063926.2-201ENST00000623766 1308 ntBASIC11.35□□□□□ -0.59
HSPG2P98160 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC11.35□□□□□ -0.59
HSPG2P98160 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
HSPG2P98160 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
HSPG2P98160 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC11.35□□□□□ -0.59
HSPG2P98160 TAF8-206ENST00000472818 719 ntTSL 2 BASIC11.35□□□□□ -0.59
HSPG2P98160 LINC00628-201ENST00000628516 1289 ntBASIC11.35□□□□□ -0.59
HSPG2P98160 ANKRD20A8P-203ENST00000641373 517 ntBASIC11.35□□□□□ -0.59
HSPG2P98160 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
HSPG2P98160 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HSPG2P98160 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC11.35□□□□□ -0.59
HSPG2P98160 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC11.35□□□□□ -0.59
HSPG2P98160 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
HSPG2P98160 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC11.35□□□□□ -0.59
HSPG2P98160 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
HSPG2P98160 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC11.35□□□□□ -0.59
HSPG2P98160 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC11.35□□□□□ -0.59
HSPG2P98160 CEND1P1-201ENST00000451006 455 ntBASIC11.35□□□□□ -0.59
HSPG2P98160 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC11.35□□□□□ -0.59
HSPG2P98160 AQP6-203ENST00000551733 849 ntTSL 3 BASIC11.35□□□□□ -0.59
HSPG2P98160 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC11.35□□□□□ -0.59
HSPG2P98160 AC006504.4-201ENST00000592118 1568 ntBASIC11.35□□□□□ -0.59
HSPG2P98160 AL606495.2-201ENST00000605867 535 ntBASIC11.35□□□□□ -0.59
HSPG2P98160 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 GPR89P-201ENST00000407924 1495 ntBASIC11.34□□□□□ -0.59
HSPG2P98160 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC11.34□□□□□ -0.59
HSPG2P98160 KRT8P50-201ENST00000562022 1438 ntBASIC11.34□□□□□ -0.59
HSPG2P98160 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC11.34□□□□□ -0.59
HSPG2P98160 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC11.34□□□□□ -0.59
HSPG2P98160 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC11.34□□□□□ -0.59
HSPG2P98160 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
HSPG2P98160 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 KRT8P32-201ENST00000512863 1461 ntBASIC11.34□□□□□ -0.59
HSPG2P98160 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
HSPG2P98160 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 OARD1-208ENST00000469104 704 ntTSL 2 BASIC11.34□□□□□ -0.59
HSPG2P98160 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC11.34□□□□□ -0.59
HSPG2P98160 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC11.34□□□□□ -0.59
HSPG2P98160 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC11.34□□□□□ -0.59
HSPG2P98160 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
HSPG2P98160 AC097374.2-201ENST00000618617 1306 ntBASIC11.34□□□□□ -0.59
HSPG2P98160 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC11.34□□□□□ -0.59
HSPG2P98160 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 AC079776.2-201ENST00000641154 1609 ntBASIC11.34□□□□□ -0.59
HSPG2P98160 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 AC093214.1-201ENST00000511688 1107 ntBASIC11.34□□□□□ -0.59
HSPG2P98160 AC136632.2-201ENST00000512891 861 ntBASIC11.34□□□□□ -0.59
HSPG2P98160 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HSPG2P98160 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC11.33□□□□□ -0.59
HSPG2P98160 CYP51A1P1-201ENST00000492267 1507 ntBASIC11.33□□□□□ -0.59
HSPG2P98160 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC11.33□□□□□ -0.59
HSPG2P98160 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HSPG2P98160 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HSPG2P98160 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HSPG2P98160 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
HSPG2P98160 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HSPG2P98160 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HSPG2P98160 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HSPG2P98160 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC11.33□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms