Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
PEX3P56589 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.26■□□□□ 0.83
PEX3P56589 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PEX3P56589 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
PEX3P56589 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.26■□□□□ 0.83
PEX3P56589 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
PEX3P56589 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
PEX3P56589 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
PEX3P56589 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.25■□□□□ 0.83
PEX3P56589 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.25■□□□□ 0.83
PEX3P56589 AL121956.5-201ENST00000625261 221 ntBASIC20.25■□□□□ 0.83
PEX3P56589 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.25■□□□□ 0.83
PEX3P56589 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.25■□□□□ 0.83
PEX3P56589 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PEX3P56589 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.25■□□□□ 0.83
PEX3P56589 AC104581.1-202ENST00000635932 2618 ntBASIC20.24■□□□□ 0.83
PEX3P56589 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.24■□□□□ 0.83
PEX3P56589 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
PEX3P56589 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.24■□□□□ 0.83
PEX3P56589 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
PEX3P56589 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.24■□□□□ 0.83
PEX3P56589 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
PEX3P56589 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.24■□□□□ 0.83
PEX3P56589 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.24■□□□□ 0.83
PEX3P56589 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.24■□□□□ 0.83
PEX3P56589 FAM86EP-206ENST00000510506 987 ntBASIC20.24■□□□□ 0.83
PEX3P56589 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.24■□□□□ 0.83
PEX3P56589 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.24■□□□□ 0.83
PEX3P56589 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.24■□□□□ 0.83
PEX3P56589 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.24■□□□□ 0.83
PEX3P56589 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.24■□□□□ 0.83
PEX3P56589 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.24■□□□□ 0.83
PEX3P56589 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.24■□□□□ 0.83
PEX3P56589 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.24■□□□□ 0.83
PEX3P56589 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.24■□□□□ 0.83
PEX3P56589 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.24■□□□□ 0.83
PEX3P56589 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PEX3P56589 AL020996.1-203ENST00000536896 2307 ntBASIC20.24■□□□□ 0.83
PEX3P56589 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
PEX3P56589 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
PEX3P56589 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.23■□□□□ 0.83
PEX3P56589 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PEX3P56589 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
PEX3P56589 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
PEX3P56589 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PEX3P56589 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PEX3P56589 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
PEX3P56589 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.23■□□□□ 0.83
PEX3P56589 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.23■□□□□ 0.83
PEX3P56589 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.23■□□□□ 0.83
PEX3P56589 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
PEX3P56589 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
PEX3P56589 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PEX3P56589 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.23■□□□□ 0.83
PEX3P56589 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.23■□□□□ 0.83
PEX3P56589 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.23■□□□□ 0.83
PEX3P56589 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PEX3P56589 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PEX3P56589 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
PEX3P56589 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.23■□□□□ 0.83
PEX3P56589 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PEX3P56589 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.23■□□□□ 0.83
PEX3P56589 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
PEX3P56589 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PEX3P56589 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.22■□□□□ 0.83
PEX3P56589 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms