Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC25.42■■□□□ 1.66
MSH6P52701 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC25.42■■□□□ 1.66
MSH6P52701 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC25.42■■□□□ 1.66
MSH6P52701 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
MSH6P52701 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 Z98044.1-201ENST00000632503 1764 ntBASIC25.41■■□□□ 1.66
MSH6P52701 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC25.41■■□□□ 1.66
MSH6P52701 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC25.41■■□□□ 1.66
MSH6P52701 USP39-204ENST00000409766 2033 ntTSL 2 BASIC25.41■■□□□ 1.66
MSH6P52701 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH6P52701 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC25.41■■□□□ 1.66
MSH6P52701 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC25.41■■□□□ 1.66
MSH6P52701 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC25.41■■□□□ 1.66
MSH6P52701 ALG1L5P-201ENST00000482043 771 ntBASIC25.41■■□□□ 1.66
MSH6P52701 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC25.41■■□□□ 1.66
MSH6P52701 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC25.41■■□□□ 1.66
MSH6P52701 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC25.41■■□□□ 1.66
MSH6P52701 AC008687.5-201ENST00000593746 558 ntBASIC25.41■■□□□ 1.66
MSH6P52701 AC011467.4-201ENST00000594891 528 ntBASIC25.41■■□□□ 1.66
MSH6P52701 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
MSH6P52701 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC25.4■■□□□ 1.66
MSH6P52701 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH6P52701 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
MSH6P52701 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
MSH6P52701 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
MSH6P52701 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC25.4■■□□□ 1.66
MSH6P52701 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC25.4■■□□□ 1.66
MSH6P52701 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC25.4■■□□□ 1.66
MSH6P52701 RNF151-202ENST00000569210 853 ntTSL 2 BASIC25.4■■□□□ 1.66
MSH6P52701 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC25.4■■□□□ 1.66
MSH6P52701 AC068587.9-201ENST00000641814 219 ntBASIC25.4■■□□□ 1.66
MSH6P52701 AC125634.1-201ENST00000438758 1403 ntBASIC25.4■■□□□ 1.66
MSH6P52701 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH6P52701 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC25.4■■□□□ 1.66
MSH6P52701 MED17-221ENST00000639724 2317 ntTSL 5 BASIC25.39■■□□□ 1.66
MSH6P52701 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC25.39■■□□□ 1.66
MSH6P52701 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH6P52701 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
MSH6P52701 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC25.39■■□□□ 1.66
MSH6P52701 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC25.39■■□□□ 1.66
MSH6P52701 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH6P52701 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC25.39■■□□□ 1.65
MSH6P52701 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC25.39■■□□□ 1.65
MSH6P52701 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
MSH6P52701 MIR4469-201ENST00000583919 79 ntBASIC25.39■■□□□ 1.65
MSH6P52701 NKAPP1-205ENST00000585790 367 ntBASIC25.39■■□□□ 1.65
MSH6P52701 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
MSH6P52701 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC25.39■■□□□ 1.65
MSH6P52701 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
MSH6P52701 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC25.39■■□□□ 1.65
MSH6P52701 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC25.39■■□□□ 1.65
MSH6P52701 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC25.39■■□□□ 1.65
MSH6P52701 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH6P52701 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH6P52701 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC25.38■■□□□ 1.65
MSH6P52701 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC25.38■■□□□ 1.65
MSH6P52701 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
MSH6P52701 WDR53-203ENST00000429115 683 ntTSL 2 BASIC25.38■■□□□ 1.65
MSH6P52701 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH6P52701 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC25.38■■□□□ 1.65
MSH6P52701 COX5A-206ENST00000568783 571 ntTSL 3 BASIC25.38■■□□□ 1.65
MSH6P52701 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC25.38■■□□□ 1.65
MSH6P52701 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC25.38■■□□□ 1.65
MSH6P52701 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
MSH6P52701 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC25.38■■□□□ 1.65
MSH6P52701 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC25.38■■□□□ 1.65
MSH6P52701 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
MSH6P52701 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC25.37■■□□□ 1.65
MSH6P52701 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC25.37■■□□□ 1.65
MSH6P52701 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC25.37■■□□□ 1.65
MSH6P52701 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC25.37■■□□□ 1.65
MSH6P52701 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH6P52701 SYS1-203ENST00000414310 795 ntTSL 3 BASIC25.37■■□□□ 1.65
MSH6P52701 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC25.37■■□□□ 1.65
MSH6P52701 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC25.37■■□□□ 1.65
MSH6P52701 MSRA-206ENST00000521209 814 ntTSL 3 BASIC25.37■■□□□ 1.65
MSH6P52701 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC25.37■■□□□ 1.65
MSH6P52701 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC25.37■■□□□ 1.65
MSH6P52701 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
MSH6P52701 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC25.37■■□□□ 1.65
MSH6P52701 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC25.37■■□□□ 1.65
MSH6P52701 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC25.37■■□□□ 1.65
MSH6P52701 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms