Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.34■□□□□ 0.69
LIG3P49916 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.34■□□□□ 0.69
LIG3P49916 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LIG3P49916 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.34■□□□□ 0.69
LIG3P49916 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LIG3P49916 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LIG3P49916 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
LIG3P49916 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.34■□□□□ 0.69
LIG3P49916 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIG3P49916 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.33■□□□□ 0.69
LIG3P49916 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIG3P49916 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIG3P49916 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIG3P49916 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.33■□□□□ 0.69
LIG3P49916 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
LIG3P49916 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIG3P49916 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIG3P49916 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIG3P49916 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
LIG3P49916 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIG3P49916 MIR1238-201ENST00000408483 83 ntBASIC19.33■□□□□ 0.68
LIG3P49916 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.33■□□□□ 0.68
LIG3P49916 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
LIG3P49916 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.33■□□□□ 0.68
LIG3P49916 Z85996.1-201ENST00000494644 937 ntBASIC19.33■□□□□ 0.68
LIG3P49916 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIG3P49916 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.33■□□□□ 0.68
LIG3P49916 AC011298.2-201ENST00000617989 482 ntBASIC19.33■□□□□ 0.68
LIG3P49916 AC130371.2-201ENST00000619443 611 ntBASIC19.33■□□□□ 0.68
LIG3P49916 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.33■□□□□ 0.68
LIG3P49916 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.33■□□□□ 0.68
LIG3P49916 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIG3P49916 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
LIG3P49916 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIG3P49916 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
LIG3P49916 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
LIG3P49916 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIG3P49916 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIG3P49916 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LIG3P49916 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
LIG3P49916 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.32■□□□□ 0.68
LIG3P49916 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.32■□□□□ 0.68
LIG3P49916 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.32■□□□□ 0.68
LIG3P49916 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
LIG3P49916 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.32■□□□□ 0.68
LIG3P49916 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 AC004951.3-201ENST00000418645 1148 ntBASIC19.32■□□□□ 0.68
LIG3P49916 AL390955.1-201ENST00000428694 934 ntBASIC19.32■□□□□ 0.68
LIG3P49916 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.32■□□□□ 0.68
LIG3P49916 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
LIG3P49916 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
LIG3P49916 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LIG3P49916 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
LIG3P49916 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
LIG3P49916 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.32■□□□□ 0.68
LIG3P49916 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
LIG3P49916 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIG3P49916 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.31■□□□□ 0.68
LIG3P49916 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIG3P49916 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.31■□□□□ 0.68
LIG3P49916 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.31■□□□□ 0.68
LIG3P49916 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms