Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC23.15■■□□□ 1.3
COL5A3P25940 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC23.15■■□□□ 1.3
COL5A3P25940 RNA5SP415-201ENST00000517246 115 ntBASIC23.15■■□□□ 1.3
COL5A3P25940 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL5A3P25940 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC23.15■■□□□ 1.3
COL5A3P25940 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC23.15■■□□□ 1.3
COL5A3P25940 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
COL5A3P25940 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL5A3P25940 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL5A3P25940 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
COL5A3P25940 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC23.15■■□□□ 1.3
COL5A3P25940 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL5A3P25940 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL5A3P25940 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
COL5A3P25940 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC23.14■■□□□ 1.3
COL5A3P25940 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC23.14■■□□□ 1.3
COL5A3P25940 GPX1P2-201ENST00000429271 606 ntBASIC23.14■■□□□ 1.3
COL5A3P25940 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC23.14■■□□□ 1.3
COL5A3P25940 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL5A3P25940 AC027601.4-201ENST00000611259 610 ntBASIC23.14■■□□□ 1.3
COL5A3P25940 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC23.14■■□□□ 1.3
COL5A3P25940 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
COL5A3P25940 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL5A3P25940 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL5A3P25940 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL5A3P25940 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL5A3P25940 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC23.13■■□□□ 1.29
COL5A3P25940 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC23.13■■□□□ 1.29
COL5A3P25940 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC23.13■■□□□ 1.29
COL5A3P25940 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC23.13■■□□□ 1.29
COL5A3P25940 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC23.13■■□□□ 1.29
COL5A3P25940 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC23.13■■□□□ 1.29
COL5A3P25940 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
COL5A3P25940 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC23.13■■□□□ 1.29
COL5A3P25940 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
COL5A3P25940 AL032819.2-201ENST00000624543 2162 ntBASIC23.13■■□□□ 1.29
COL5A3P25940 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL5A3P25940 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL5A3P25940 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL5A3P25940 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL5A3P25940 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL5A3P25940 CTNS-203ENST00000399306 803 ntTSL 3 BASIC23.13■■□□□ 1.29
COL5A3P25940 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC23.13■■□□□ 1.29
COL5A3P25940 PMS2P2-201ENST00000425039 1128 ntBASIC23.13■■□□□ 1.29
COL5A3P25940 AC007967.2-201ENST00000432613 625 ntBASIC23.13■■□□□ 1.29
COL5A3P25940 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL5A3P25940 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL5A3P25940 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL5A3P25940 ADK-206ENST00000541550 2222 ntTSL 2 BASIC23.13■■□□□ 1.29
COL5A3P25940 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
COL5A3P25940 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.12■■□□□ 1.29
COL5A3P25940 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC23.12■■□□□ 1.29
COL5A3P25940 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC23.12■■□□□ 1.29
COL5A3P25940 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
COL5A3P25940 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 KIRREL3-AS3-201ENST00000404882 831 ntBASIC23.12■■□□□ 1.29
COL5A3P25940 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC23.12■■□□□ 1.29
COL5A3P25940 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC23.12■■□□□ 1.29
COL5A3P25940 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
COL5A3P25940 HS6ST1P1-201ENST00000481504 1234 ntBASIC23.12■■□□□ 1.29
COL5A3P25940 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC23.12■■□□□ 1.29
COL5A3P25940 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC23.12■■□□□ 1.29
COL5A3P25940 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC23.12■■□□□ 1.29
COL5A3P25940 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC23.12■■□□□ 1.29
COL5A3P25940 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC23.12■■□□□ 1.29
COL5A3P25940 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC23.12■■□□□ 1.29
COL5A3P25940 AL049812.1-201ENST00000432563 2267 ntBASIC23.12■■□□□ 1.29
COL5A3P25940 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL5A3P25940 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL5A3P25940 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL5A3P25940 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL5A3P25940 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL5A3P25940 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL5A3P25940 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
COL5A3P25940 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
COL5A3P25940 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
COL5A3P25940 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC23.11■■□□□ 1.29
COL5A3P25940 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC23.11■■□□□ 1.29
COL5A3P25940 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC23.11■■□□□ 1.29
COL5A3P25940 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL5A3P25940 MTDHP4-201ENST00000600287 670 ntBASIC23.11■■□□□ 1.29
COL5A3P25940 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC23.11■■□□□ 1.29
COL5A3P25940 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC23.11■■□□□ 1.29
COL5A3P25940 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC23.11■■□□□ 1.29
COL5A3P25940 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL5A3P25940 AL356309.3-201ENST00000624132 1934 ntBASIC23.11■■□□□ 1.29
COL5A3P25940 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
COL5A3P25940 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL5A3P25940 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL5A3P25940 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms