Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
HMGB1P09429 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
HMGB1P09429 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.73■■□□□ 1.07
HMGB1P09429 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB1P09429 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC21.73■■□□□ 1.07
HMGB1P09429 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
HMGB1P09429 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.72■■□□□ 1.07
HMGB1P09429 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGB1P09429 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
HMGB1P09429 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGB1P09429 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
HMGB1P09429 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGB1P09429 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.72■■□□□ 1.07
HMGB1P09429 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGB1P09429 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.72■■□□□ 1.07
HMGB1P09429 SLC25A3P1-201ENST00000443844 931 ntBASIC21.72■■□□□ 1.07
HMGB1P09429 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGB1P09429 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
HMGB1P09429 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 AC024243.1-201ENST00000609234 778 ntBASIC21.72■■□□□ 1.07
HMGB1P09429 AC012306.2-201ENST00000609350 630 ntBASIC21.72■■□□□ 1.07
HMGB1P09429 AC141257.4-201ENST00000634557 245 ntBASIC21.72■■□□□ 1.07
HMGB1P09429 AC136944.6-201ENST00000634818 245 ntBASIC21.72■■□□□ 1.07
HMGB1P09429 AC097493.4-201ENST00000641197 219 ntBASIC21.72■■□□□ 1.07
HMGB1P09429 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
HMGB1P09429 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
HMGB1P09429 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGB1P09429 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGB1P09429 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.72■■□□□ 1.07
HMGB1P09429 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB1P09429 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB1P09429 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB1P09429 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.71■■□□□ 1.07
HMGB1P09429 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGB1P09429 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
HMGB1P09429 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB1P09429 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.71■■□□□ 1.07
HMGB1P09429 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB1P09429 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.71■■□□□ 1.07
HMGB1P09429 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB1P09429 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGB1P09429 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.71■■□□□ 1.07
HMGB1P09429 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.71■■□□□ 1.07
HMGB1P09429 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.71■■□□□ 1.07
HMGB1P09429 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGB1P09429 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGB1P09429 AC092865.7-201ENST00000641832 219 ntBASIC21.71■■□□□ 1.07
HMGB1P09429 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB1P09429 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB1P09429 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB1P09429 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB1P09429 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
HMGB1P09429 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.71■■□□□ 1.07
HMGB1P09429 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.07
HMGB1P09429 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGB1P09429 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGB1P09429 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
HMGB1P09429 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGB1P09429 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.06
HMGB1P09429 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.7■■□□□ 1.06
HMGB1P09429 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.7■■□□□ 1.06
HMGB1P09429 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.7■■□□□ 1.06
HMGB1P09429 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGB1P09429 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.7■■□□□ 1.06
HMGB1P09429 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGB1P09429 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGB1P09429 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB1P09429 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HMGB1P09429 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
HMGB1P09429 NOC2LP1-202ENST00000452600 2235 ntBASIC21.7■■□□□ 1.06
HMGB1P09429 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB1P09429 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.69■■□□□ 1.06
HMGB1P09429 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB1P09429 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB1P09429 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB1P09429 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.69■■□□□ 1.06
HMGB1P09429 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
HMGB1P09429 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB1P09429 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.69■■□□□ 1.06
HMGB1P09429 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms