Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A2P08572 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A2P08572 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A2P08572 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A2P08572 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A2P08572 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A2P08572 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A2P08572 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A2P08572 AC068472.1-201ENST00000474589 881 ntBASIC18.51■□□□□ 0.55
COL4A2P08572 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A2P08572 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A2P08572 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A2P08572 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A2P08572 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.51■□□□□ 0.55
COL4A2P08572 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A2P08572 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL4A2P08572 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A2P08572 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A2P08572 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A2P08572 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A2P08572 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A2P08572 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COL4A2P08572 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A2P08572 AC092183.1-201ENST00000469884 875 ntBASIC18.5■□□□□ 0.55
COL4A2P08572 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A2P08572 OR7E14P-202ENST00000530490 1290 ntBASIC18.5■□□□□ 0.55
COL4A2P08572 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.5■□□□□ 0.55
COL4A2P08572 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A2P08572 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.5■□□□□ 0.55
COL4A2P08572 AC008735.5-201ENST00000623544 497 ntBASIC18.5■□□□□ 0.55
COL4A2P08572 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.5■□□□□ 0.55
COL4A2P08572 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.5■□□□□ 0.55
COL4A2P08572 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A2P08572 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A2P08572 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.5■□□□□ 0.55
COL4A2P08572 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
COL4A2P08572 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.49■□□□□ 0.55
COL4A2P08572 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.49■□□□□ 0.55
COL4A2P08572 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.49■□□□□ 0.55
COL4A2P08572 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A2P08572 Z83851.2-201ENST00000609564 659 ntBASIC18.49■□□□□ 0.55
COL4A2P08572 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
COL4A2P08572 AL032819.2-201ENST00000624543 2162 ntBASIC18.49■□□□□ 0.55
COL4A2P08572 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A2P08572 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 AL049812.1-201ENST00000432563 2267 ntBASIC18.49■□□□□ 0.55
COL4A2P08572 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.49■□□□□ 0.55
COL4A2P08572 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 MED15P5-201ENST00000423150 992 ntBASIC18.49■□□□□ 0.55
COL4A2P08572 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.49■□□□□ 0.55
COL4A2P08572 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A2P08572 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A2P08572 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.49■□□□□ 0.55
COL4A2P08572 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.49■□□□□ 0.55
COL4A2P08572 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.49■□□□□ 0.55
COL4A2P08572 AC055717.3-201ENST00000622967 595 ntBASIC18.49■□□□□ 0.55
COL4A2P08572 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A2P08572 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A2P08572 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A2P08572 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A2P08572 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A2P08572 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A2P08572 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A2P08572 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A2P08572 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A2P08572 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A2P08572 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.48■□□□□ 0.55
COL4A2P08572 HMGN1P19-201ENST00000436976 333 ntBASIC18.48■□□□□ 0.55
COL4A2P08572 MTCL1P1-201ENST00000446207 792 ntBASIC18.48■□□□□ 0.55
COL4A2P08572 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A2P08572 AC008687.5-201ENST00000593746 558 ntBASIC18.48■□□□□ 0.55
COL4A2P08572 FAM197Y3-203ENST00000618346 717 ntBASIC18.48■□□□□ 0.55
COL4A2P08572 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
COL4A2P08572 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A2P08572 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A2P08572 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A2P08572 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms