Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.42■□□□□ 0.54
LDB2O43679 GMCL1P1-201ENST00000463439 1581 ntBASIC18.42■□□□□ 0.54
LDB2O43679 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDB2O43679 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
LDB2O43679 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.41■□□□□ 0.54
LDB2O43679 AC073508.3-201ENST00000619697 1419 ntBASIC18.41■□□□□ 0.54
LDB2O43679 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
LDB2O43679 TERF1P1-201ENST00000311003 1181 ntBASIC18.41■□□□□ 0.54
LDB2O43679 MIR1224-201ENST00000408193 85 ntBASIC18.41■□□□□ 0.54
LDB2O43679 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.41■□□□□ 0.54
LDB2O43679 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.41■□□□□ 0.54
LDB2O43679 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.41■□□□□ 0.54
LDB2O43679 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.41■□□□□ 0.54
LDB2O43679 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.41■□□□□ 0.54
LDB2O43679 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.41■□□□□ 0.54
LDB2O43679 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.41■□□□□ 0.54
LDB2O43679 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.41■□□□□ 0.54
LDB2O43679 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.41■□□□□ 0.54
LDB2O43679 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.41■□□□□ 0.54
LDB2O43679 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.41■□□□□ 0.54
LDB2O43679 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB2O43679 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LDB2O43679 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LDB2O43679 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LDB2O43679 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
LDB2O43679 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.4■□□□□ 0.54
LDB2O43679 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
LDB2O43679 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.4■□□□□ 0.54
LDB2O43679 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 AP000523.1-201ENST00000398242 1049 ntBASIC18.4■□□□□ 0.54
LDB2O43679 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.4■□□□□ 0.54
LDB2O43679 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.4■□□□□ 0.54
LDB2O43679 MIR3917-201ENST00000580971 93 ntBASIC18.4■□□□□ 0.54
LDB2O43679 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
LDB2O43679 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDB2O43679 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.39■□□□□ 0.54
LDB2O43679 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
LDB2O43679 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.39■□□□□ 0.54
LDB2O43679 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LDB2O43679 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
LDB2O43679 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
LDB2O43679 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
LDB2O43679 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
LDB2O43679 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
LDB2O43679 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
LDB2O43679 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.39■□□□□ 0.53
LDB2O43679 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 LIN28AP1-201ENST00000429574 405 ntBASIC18.39■□□□□ 0.53
LDB2O43679 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.39■□□□□ 0.53
LDB2O43679 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
LDB2O43679 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.39■□□□□ 0.53
LDB2O43679 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB2O43679 GCSHP2-201ENST00000560971 527 ntBASIC18.39■□□□□ 0.53
LDB2O43679 AC009065.1-201ENST00000564055 1225 ntBASIC18.39■□□□□ 0.53
LDB2O43679 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.39■□□□□ 0.53
LDB2O43679 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB2O43679 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB2O43679 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB2O43679 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB2O43679 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB2O43679 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.39■□□□□ 0.53
LDB2O43679 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDB2O43679 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDB2O43679 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms