Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 MIR943-201ENST00000401286 94 ntBASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 AC015911.4-201ENST00000588022 1070 ntBASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 AL589182.2-201ENST00000619332 1049 ntBASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CCDC85CA6NKD9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 AP005212.1-201ENST00000581547 1997 ntBASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 KRT17P7-201ENST00000451704 1104 ntBASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 AC108073.2-201ENST00000464002 357 ntBASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 AC091812.2-201ENST00000619081 385 ntBASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 AC025048.6-201ENST00000634326 1161 ntBASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 AL512353.2-201ENST00000448759 1962 ntBASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CCDC85CA6NKD9 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CCDC85CA6NKD9 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 RN7SL692P-201ENST00000464677 288 ntBASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 VPS29-207ENST00000549970 818 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 AC022145.2-201ENST00000598203 171 ntBASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC85CA6NKD9 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 C9orf163-202ENST00000624034 2573 ntBASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 COX5BP8-201ENST00000416911 349 ntBASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms