Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DRB4X5D2U9 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DRB4X5D2U9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DRB4X5D2U9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC18.64■□□□□ 0.57
HLA-DRB4X5D2U9 CHST11-202ENST00000546689 756 ntTSL 2 BASIC18.64■□□□□ 0.57
HLA-DRB4X5D2U9 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DRB4X5D2U9 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DRB4X5D2U9 SHF-208ENST00000560734 1731 ntTSL 3 BASIC18.63■□□□□ 0.57
HLA-DRB4X5D2U9 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC18.63■□□□□ 0.57
HLA-DRB4X5D2U9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC18.63■□□□□ 0.57
HLA-DRB4X5D2U9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HLA-DRB4X5D2U9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DRB4X5D2U9 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
HLA-DRB4X5D2U9 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DRB4X5D2U9 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HLA-DRB4X5D2U9 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HLA-DRB4X5D2U9 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HLA-DRB4X5D2U9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DRB4X5D2U9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HLA-DRB4X5D2U9 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HLA-DRB4X5D2U9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DRB4X5D2U9 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DRB4X5D2U9 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HLA-DRB4X5D2U9 HES6-205ENST00000409356 528 ntTSL 2 BASIC18.61■□□□□ 0.57
HLA-DRB4X5D2U9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC18.61■□□□□ 0.57
HLA-DRB4X5D2U9 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DRB4X5D2U9 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
HLA-DRB4X5D2U9 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DRB4X5D2U9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DRB4X5D2U9 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DRB4X5D2U9 AC008813.1-201ENST00000536597 885 ntBASIC18.6■□□□□ 0.57
HLA-DRB4X5D2U9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DRB4X5D2U9 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HLA-DRB4X5D2U9 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DRB4X5D2U9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
HLA-DRB4X5D2U9 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DRB4X5D2U9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HLA-DRB4X5D2U9 CR559946.2-201ENST00000623684 991 ntBASIC18.59■□□□□ 0.57
HLA-DRB4X5D2U9 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.58■□□□□ 0.57
HLA-DRB4X5D2U9 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HLA-DRB4X5D2U9 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
HLA-DRB4X5D2U9 MIR7108-201ENST00000614319 87 ntBASIC18.58■□□□□ 0.56
HLA-DRB4X5D2U9 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DRB4X5D2U9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HLA-DRB4X5D2U9 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HLA-DRB4X5D2U9 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DRB4X5D2U9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DRB4X5D2U9 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DRB4X5D2U9 MIR3648-2-201ENST00000581792 180 ntBASIC18.56■□□□□ 0.56
HLA-DRB4X5D2U9 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HLA-DRB4X5D2U9 MIR3648-1-201ENST00000615959 180 ntBASIC18.56■□□□□ 0.56
HLA-DRB4X5D2U9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC18.56■□□□□ 0.56
HLA-DRB4X5D2U9 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
HLA-DRB4X5D2U9 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
HLA-DRB4X5D2U9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC18.55■□□□□ 0.56
HLA-DRB4X5D2U9 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DRB4X5D2U9 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DRB4X5D2U9 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC18.55■□□□□ 0.56
HLA-DRB4X5D2U9 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HLA-DRB4X5D2U9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.54■□□□□ 0.56
HLA-DRB4X5D2U9 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
HLA-DRB4X5D2U9 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DRB4X5D2U9 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DRB4X5D2U9 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DRB4X5D2U9 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DRB4X5D2U9 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC18.54■□□□□ 0.56
HLA-DRB4X5D2U9 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DRB4X5D2U9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HLA-DRB4X5D2U9 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
HLA-DRB4X5D2U9 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HLA-DRB4X5D2U9 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
HLA-DRB4X5D2U9 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HLA-DRB4X5D2U9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC18.52■□□□□ 0.56
HLA-DRB4X5D2U9 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC18.52■□□□□ 0.56
HLA-DRB4X5D2U9 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
HLA-DRB4X5D2U9 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DRB4X5D2U9 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HLA-DRB4X5D2U9 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
HLA-DRB4X5D2U9 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HLA-DRB4X5D2U9 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DRB4X5D2U9 SNAI3-AS1-204ENST00000567997 2048 ntBASIC18.51■□□□□ 0.55
HLA-DRB4X5D2U9 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC18.51■□□□□ 0.55
HLA-DRB4X5D2U9 AC016575.1-201ENST00000607026 382 ntBASIC18.51■□□□□ 0.55
HLA-DRB4X5D2U9 AC148477.6-201ENST00000623746 465 ntBASIC18.51■□□□□ 0.55
HLA-DRB4X5D2U9 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DRB4X5D2U9 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DRB4X5D2U9 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
HLA-DRB4X5D2U9 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HLA-DRB4X5D2U9 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HLA-DRB4X5D2U9 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DRB4X5D2U9 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DRB4X5D2U9 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HLA-DRB4X5D2U9 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HLA-DRB4X5D2U9 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DRB4X5D2U9 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
HLA-DRB4X5D2U9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC18.49■□□□□ 0.55
HLA-DRB4X5D2U9 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
HLA-DRB4X5D2U9 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DRB4X5D2U9 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HLA-DRB4X5D2U9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms