Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.11■■□□□ 1.45
PCDHGA3Q9Y5H0 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHGA3Q9Y5H0 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.1■■□□□ 1.45
PCDHGA3Q9Y5H0 AC018358.1-201ENST00000631079 1402 ntBASIC24.1■■□□□ 1.45
PCDHGA3Q9Y5H0 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA3Q9Y5H0 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.09■■□□□ 1.45
PCDHGA3Q9Y5H0 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA3Q9Y5H0 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA3Q9Y5H0 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA3Q9Y5H0 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.09■■□□□ 1.45
PCDHGA3Q9Y5H0 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC24.08■■□□□ 1.45
PCDHGA3Q9Y5H0 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHGA3Q9Y5H0 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC24.08■■□□□ 1.45
PCDHGA3Q9Y5H0 AP004833.2-201ENST00000532228 1454 ntBASIC24.07■■□□□ 1.44
PCDHGA3Q9Y5H0 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHGA3Q9Y5H0 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHGA3Q9Y5H0 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.07■■□□□ 1.44
PCDHGA3Q9Y5H0 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHGA3Q9Y5H0 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC24.06■■□□□ 1.44
PCDHGA3Q9Y5H0 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
PCDHGA3Q9Y5H0 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHGA3Q9Y5H0 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC24.06■■□□□ 1.44
PCDHGA3Q9Y5H0 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHGA3Q9Y5H0 AC142086.6-201ENST00000621154 1765 ntBASIC24.06■■□□□ 1.44
PCDHGA3Q9Y5H0 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA3Q9Y5H0 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
PCDHGA3Q9Y5H0 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
PCDHGA3Q9Y5H0 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC24.05■■□□□ 1.44
PCDHGA3Q9Y5H0 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA3Q9Y5H0 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA3Q9Y5H0 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
PCDHGA3Q9Y5H0 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.04■■□□□ 1.44
PCDHGA3Q9Y5H0 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHGA3Q9Y5H0 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC24.04■■□□□ 1.44
PCDHGA3Q9Y5H0 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHGA3Q9Y5H0 AL033527.3-201ENST00000566366 1196 ntBASIC24.04■■□□□ 1.44
PCDHGA3Q9Y5H0 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC24.04■■□□□ 1.44
PCDHGA3Q9Y5H0 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
PCDHGA3Q9Y5H0 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHGA3Q9Y5H0 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHGA3Q9Y5H0 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
PCDHGA3Q9Y5H0 MED25-210ENST00000612854 801 ntTSL 5 BASIC24.03■■□□□ 1.44
PCDHGA3Q9Y5H0 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHGA3Q9Y5H0 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.03■■□□□ 1.44
PCDHGA3Q9Y5H0 MED25-214ENST00000622402 642 ntTSL 5 BASIC24.03■■□□□ 1.44
PCDHGA3Q9Y5H0 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHGA3Q9Y5H0 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHGA3Q9Y5H0 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHGA3Q9Y5H0 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHGA3Q9Y5H0 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
PCDHGA3Q9Y5H0 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHGA3Q9Y5H0 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PCDHGA3Q9Y5H0 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDHGA3Q9Y5H0 KRT18P60-201ENST00000312876 1297 ntBASIC24■■□□□ 1.43
PCDHGA3Q9Y5H0 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
PCDHGA3Q9Y5H0 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA3Q9Y5H0 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA3Q9Y5H0 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.99■■□□□ 1.43
PCDHGA3Q9Y5H0 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA3Q9Y5H0 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.99■■□□□ 1.43
PCDHGA3Q9Y5H0 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHGA3Q9Y5H0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHGA3Q9Y5H0 TSPY13P-201ENST00000338964 914 ntBASIC23.98■■□□□ 1.43
PCDHGA3Q9Y5H0 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDHGA3Q9Y5H0 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
PCDHGA3Q9Y5H0 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA3Q9Y5H0 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
PCDHGA3Q9Y5H0 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA3Q9Y5H0 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA3Q9Y5H0 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA3Q9Y5H0 AL157400.5-201ENST00000507624 621 ntBASIC23.97■■□□□ 1.43
PCDHGA3Q9Y5H0 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA3Q9Y5H0 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.97■■□□□ 1.43
PCDHGA3Q9Y5H0 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHGA3Q9Y5H0 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
PCDHGA3Q9Y5H0 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHGA3Q9Y5H0 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHGA3Q9Y5H0 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHGA3Q9Y5H0 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.95■■□□□ 1.42
PCDHGA3Q9Y5H0 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
PCDHGA3Q9Y5H0 AC004987.1-201ENST00000428627 508 ntBASIC23.95■■□□□ 1.42
PCDHGA3Q9Y5H0 ATP5G2P3-201ENST00000429083 425 ntBASIC23.95■■□□□ 1.42
PCDHGA3Q9Y5H0 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.95■■□□□ 1.42
PCDHGA3Q9Y5H0 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA3Q9Y5H0 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA3Q9Y5H0 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA3Q9Y5H0 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.94■■□□□ 1.42
PCDHGA3Q9Y5H0 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA3Q9Y5H0 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
PCDHGA3Q9Y5H0 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA3Q9Y5H0 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
PCDHGA3Q9Y5H0 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC23.94■■□□□ 1.42
PCDHGA3Q9Y5H0 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA3Q9Y5H0 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.93■■□□□ 1.42
PCDHGA3Q9Y5H0 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
PCDHGA3Q9Y5H0 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.92■■□□□ 1.42
PCDHGA3Q9Y5H0 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.92■■□□□ 1.42
PCDHGA3Q9Y5H0 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
PCDHGA3Q9Y5H0 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
PCDHGA3Q9Y5H0 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms