Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.2■■□□□ 1.3
RNF4P78317 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC23.19■■□□□ 1.3
RNF4P78317 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC23.19■■□□□ 1.3
RNF4P78317 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC23.19■■□□□ 1.3
RNF4P78317 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.19■■□□□ 1.3
RNF4P78317 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
RNF4P78317 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RNF4P78317 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF4P78317 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF4P78317 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
RNF4P78317 HSD17B1P1-201ENST00000590052 955 ntBASIC23.18■■□□□ 1.3
RNF4P78317 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RNF4P78317 AC142086.6-201ENST00000621154 1765 ntBASIC23.17■■□□□ 1.3
RNF4P78317 GPX1-201ENST00000419349 1106 ntBASIC23.17■■□□□ 1.3
RNF4P78317 AC022413.1-201ENST00000624602 984 ntBASIC23.17■■□□□ 1.3
RNF4P78317 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.17■■□□□ 1.3
RNF4P78317 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RNF4P78317 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.16■■□□□ 1.3
RNF4P78317 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.16■■□□□ 1.3
RNF4P78317 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
RNF4P78317 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF4P78317 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RNF4P78317 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
RNF4P78317 AC126177.7-201ENST00000547904 679 ntBASIC23.15■■□□□ 1.3
RNF4P78317 MED25-210ENST00000612854 801 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF4P78317 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
RNF4P78317 MED25-214ENST00000622402 642 ntTSL 5 BASIC23.15■■□□□ 1.3
RNF4P78317 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
RNF4P78317 LINC01003-201ENST00000564834 1764 ntBASIC23.14■■□□□ 1.3
RNF4P78317 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
RNF4P78317 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
RNF4P78317 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF4P78317 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF4P78317 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.14■■□□□ 1.29
RNF4P78317 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
RNF4P78317 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
RNF4P78317 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
RNF4P78317 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
RNF4P78317 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.14■■□□□ 1.29
RNF4P78317 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.13■■□□□ 1.29
RNF4P78317 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.13■■□□□ 1.29
RNF4P78317 AC060814.1-201ENST00000554326 538 ntBASIC23.13■■□□□ 1.29
RNF4P78317 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
RNF4P78317 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.13■■□□□ 1.29
RNF4P78317 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.12■■□□□ 1.29
RNF4P78317 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.12■■□□□ 1.29
RNF4P78317 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.12■■□□□ 1.29
RNF4P78317 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RNF4P78317 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RNF4P78317 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
RNF4P78317 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RNF4P78317 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RNF4P78317 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
RNF4P78317 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RNF4P78317 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RNF4P78317 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RNF4P78317 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.1■■□□□ 1.29
RNF4P78317 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.1■■□□□ 1.29
RNF4P78317 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF4P78317 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF4P78317 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.09■■□□□ 1.29
RNF4P78317 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC23.09■■□□□ 1.29
RNF4P78317 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC23.09■■□□□ 1.29
RNF4P78317 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RNF4P78317 AL359258.2-201ENST00000564063 1566 ntBASIC23.09■■□□□ 1.29
RNF4P78317 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RNF4P78317 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC23.08■■□□□ 1.29
RNF4P78317 BX255925.1-201ENST00000566954 1854 ntBASIC23.08■■□□□ 1.29
RNF4P78317 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
RNF4P78317 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RNF4P78317 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
RNF4P78317 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RNF4P78317 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RNF4P78317 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.06■■□□□ 1.28
RNF4P78317 BRD4-212ENST00000630599 726 ntTSL 2 BASIC23.06■■□□□ 1.28
RNF4P78317 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
RNF4P78317 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RNF4P78317 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RNF4P78317 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF4P78317 RNF126P1-201ENST00000567452 1320 ntBASIC23.05■■□□□ 1.28
RNF4P78317 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
RNF4P78317 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RNF4P78317 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
RNF4P78317 WHAMMP3-201ENST00000611636 1609 ntBASIC23.03■■□□□ 1.28
RNF4P78317 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF4P78317 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.03■■□□□ 1.28
RNF4P78317 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
RNF4P78317 AC092296.2-201ENST00000589470 999 ntBASIC23.02■■□□□ 1.28
RNF4P78317 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RNF4P78317 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
RNF4P78317 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23■■□□□ 1.27
RNF4P78317 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23■■□□□ 1.27
RNF4P78317 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23■■□□□ 1.27
RNF4P78317 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
RNF4P78317 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
RNF4P78317 RARRES2P2-201ENST00000394842 485 ntBASIC22.99■■□□□ 1.27
RNF4P78317 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC22.99■■□□□ 1.27
RNF4P78317 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
RNF4P78317 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
RNF4P78317 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms