Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MED25-214ENST00000622402 642 ntTSL 5 BASIC28.32■■■□□ 2.12
MSH4O15457 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
MSH4O15457 AC142086.6-201ENST00000621154 1765 ntBASIC28.32■■■□□ 2.12
MSH4O15457 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
MSH4O15457 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
MSH4O15457 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
MSH4O15457 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
MSH4O15457 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.31■■■□□ 2.12
MSH4O15457 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC28.31■■■□□ 2.12
MSH4O15457 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
MSH4O15457 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
MSH4O15457 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
MSH4O15457 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
MSH4O15457 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
MSH4O15457 HSD17B1P1-201ENST00000590052 955 ntBASIC28.29■■■□□ 2.12
MSH4O15457 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
MSH4O15457 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC28.29■■■□□ 2.12
MSH4O15457 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
MSH4O15457 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
MSH4O15457 LINC01003-201ENST00000564834 1764 ntBASIC28.27■■■□□ 2.12
MSH4O15457 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC28.27■■■□□ 2.12
MSH4O15457 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
MSH4O15457 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.27■■■□□ 2.12
MSH4O15457 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC28.26■■■□□ 2.12
MSH4O15457 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.26■■■□□ 2.11
MSH4O15457 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH4O15457 GPX1-201ENST00000419349 1106 ntBASIC28.25■■■□□ 2.11
MSH4O15457 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.25■■■□□ 2.11
MSH4O15457 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH4O15457 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH4O15457 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH4O15457 AC060814.1-201ENST00000554326 538 ntBASIC28.24■■■□□ 2.11
MSH4O15457 AC022413.1-201ENST00000624602 984 ntBASIC28.24■■■□□ 2.11
MSH4O15457 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH4O15457 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH4O15457 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH4O15457 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC28.23■■■□□ 2.11
MSH4O15457 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC28.23■■■□□ 2.11
MSH4O15457 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC28.23■■■□□ 2.11
MSH4O15457 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH4O15457 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.23■■■□□ 2.11
MSH4O15457 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
MSH4O15457 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
MSH4O15457 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
MSH4O15457 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH4O15457 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
MSH4O15457 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH4O15457 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC28.21■■■□□ 2.11
MSH4O15457 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
MSH4O15457 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
MSH4O15457 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
MSH4O15457 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC28.19■■■□□ 2.1
MSH4O15457 BX255925.1-201ENST00000566954 1854 ntBASIC28.19■■■□□ 2.1
MSH4O15457 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
MSH4O15457 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC28.18■■■□□ 2.1
MSH4O15457 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
MSH4O15457 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC28.17■■■□□ 2.1
MSH4O15457 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH4O15457 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH4O15457 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH4O15457 AL359258.2-201ENST00000564063 1566 ntBASIC28.16■■■□□ 2.1
MSH4O15457 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.16■■■□□ 2.1
MSH4O15457 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC28.15■■■□□ 2.1
MSH4O15457 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
MSH4O15457 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.14■■■□□ 2.1
MSH4O15457 AC126177.7-201ENST00000547904 679 ntBASIC28.14■■■□□ 2.1
MSH4O15457 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
MSH4O15457 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.12■■■□□ 2.09
MSH4O15457 BRD4-212ENST00000630599 726 ntTSL 2 BASIC28.12■■■□□ 2.09
MSH4O15457 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
MSH4O15457 AC092296.2-201ENST00000589470 999 ntBASIC28.11■■■□□ 2.09
MSH4O15457 RNF126P1-201ENST00000567452 1320 ntBASIC28.1■■■□□ 2.09
MSH4O15457 WHAMMP3-201ENST00000611636 1609 ntBASIC28.1■■■□□ 2.09
MSH4O15457 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
MSH4O15457 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC28.09■■■□□ 2.09
MSH4O15457 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH4O15457 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28.09■■■□□ 2.09
MSH4O15457 AL157400.5-201ENST00000507624 621 ntBASIC28.08■■■□□ 2.09
MSH4O15457 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH4O15457 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
MSH4O15457 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC28.07■■■□□ 2.08
MSH4O15457 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH4O15457 MOB2-207ENST00000614710 705 ntTSL 5 BASIC28.07■■■□□ 2.08
MSH4O15457 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.07■■■□□ 2.08
MSH4O15457 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH4O15457 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28.07■■■□□ 2.08
MSH4O15457 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH4O15457 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
MSH4O15457 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH4O15457 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH4O15457 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
MSH4O15457 RARRES2P2-201ENST00000394842 485 ntBASIC28.05■■■□□ 2.08
MSH4O15457 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC28.05■■■□□ 2.08
MSH4O15457 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 202.6 ms