Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MED25-214ENST00000622402 642 ntTSL 5 BASIC28.32■■■□□ 2.12
MSH4O15457 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
MSH4O15457 AC142086.6-201ENST00000621154 1765 ntBASIC28.32■■■□□ 2.12
MSH4O15457 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
MSH4O15457 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
MSH4O15457 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
MSH4O15457 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
MSH4O15457 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.31■■■□□ 2.12
MSH4O15457 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC28.31■■■□□ 2.12
MSH4O15457 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
MSH4O15457 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
MSH4O15457 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
MSH4O15457 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
MSH4O15457 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
MSH4O15457 HSD17B1P1-201ENST00000590052 955 ntBASIC28.29■■■□□ 2.12
MSH4O15457 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
MSH4O15457 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC28.29■■■□□ 2.12
MSH4O15457 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
MSH4O15457 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
MSH4O15457 LINC01003-201ENST00000564834 1764 ntBASIC28.27■■■□□ 2.12
MSH4O15457 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC28.27■■■□□ 2.12
MSH4O15457 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
MSH4O15457 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.27■■■□□ 2.12
MSH4O15457 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC28.26■■■□□ 2.12
MSH4O15457 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.26■■■□□ 2.11
MSH4O15457 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH4O15457 GPX1-201ENST00000419349 1106 ntBASIC28.25■■■□□ 2.11
MSH4O15457 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.25■■■□□ 2.11
MSH4O15457 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH4O15457 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH4O15457 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH4O15457 AC060814.1-201ENST00000554326 538 ntBASIC28.24■■■□□ 2.11
MSH4O15457 AC022413.1-201ENST00000624602 984 ntBASIC28.24■■■□□ 2.11
MSH4O15457 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH4O15457 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH4O15457 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH4O15457 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC28.23■■■□□ 2.11
MSH4O15457 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC28.23■■■□□ 2.11
MSH4O15457 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC28.23■■■□□ 2.11
MSH4O15457 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH4O15457 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.23■■■□□ 2.11
MSH4O15457 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
MSH4O15457 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
MSH4O15457 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
MSH4O15457 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH4O15457 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
MSH4O15457 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH4O15457 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC28.21■■■□□ 2.11
MSH4O15457 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
MSH4O15457 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
MSH4O15457 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
MSH4O15457 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC28.19■■■□□ 2.1
MSH4O15457 BX255925.1-201ENST00000566954 1854 ntBASIC28.19■■■□□ 2.1
MSH4O15457 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
MSH4O15457 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC28.18■■■□□ 2.1
MSH4O15457 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
MSH4O15457 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC28.17■■■□□ 2.1
MSH4O15457 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH4O15457 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH4O15457 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH4O15457 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH4O15457 AL359258.2-201ENST00000564063 1566 ntBASIC28.16■■■□□ 2.1
MSH4O15457 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.16■■■□□ 2.1
MSH4O15457 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC28.15■■■□□ 2.1
MSH4O15457 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
MSH4O15457 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.14■■■□□ 2.1
MSH4O15457 AC126177.7-201ENST00000547904 679 ntBASIC28.14■■■□□ 2.1
MSH4O15457 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
MSH4O15457 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.12■■■□□ 2.09
MSH4O15457 BRD4-212ENST00000630599 726 ntTSL 2 BASIC28.12■■■□□ 2.09
MSH4O15457 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
MSH4O15457 AC092296.2-201ENST00000589470 999 ntBASIC28.11■■■□□ 2.09
MSH4O15457 RNF126P1-201ENST00000567452 1320 ntBASIC28.1■■■□□ 2.09
MSH4O15457 WHAMMP3-201ENST00000611636 1609 ntBASIC28.1■■■□□ 2.09
MSH4O15457 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
MSH4O15457 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC28.09■■■□□ 2.09
MSH4O15457 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH4O15457 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28.09■■■□□ 2.09
MSH4O15457 AL157400.5-201ENST00000507624 621 ntBASIC28.08■■■□□ 2.09
MSH4O15457 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
MSH4O15457 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
MSH4O15457 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC28.07■■■□□ 2.08
MSH4O15457 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH4O15457 MOB2-207ENST00000614710 705 ntTSL 5 BASIC28.07■■■□□ 2.08
MSH4O15457 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28.07■■■□□ 2.08
MSH4O15457 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
MSH4O15457 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28.07■■■□□ 2.08
MSH4O15457 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH4O15457 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
MSH4O15457 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH4O15457 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
MSH4O15457 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
MSH4O15457 RARRES2P2-201ENST00000394842 485 ntBASIC28.05■■■□□ 2.08
MSH4O15457 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC28.05■■■□□ 2.08
MSH4O15457 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms