Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 SART3-203ENST00000546611 1184 ntBASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 HLA-J-201ENST00000462773 1622 ntBASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 UPF3AP3-201ENST00000420996 769 ntBASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 RBSN-204ENST00000449050 903 ntTSL 2 BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 AC034105.1-201ENST00000563488 319 ntBASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 AC011467.2-201ENST00000598425 242 ntBASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 AL138831.2-201ENST00000606564 490 ntBASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 ASL-204ENST00000395331 1538 ntTSL 5 BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
RTCBQ9Y3I0 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 NARF-204ENST00000390006 1766 ntTSL 2 BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 FUOM-202ENST00000368551 628 ntTSL 3 BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 LBH-204ENST00000406087 559 ntTSL 4 BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 AL591424.1-201ENST00000442569 1213 ntBASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 AC092910.1-201ENST00000482027 1129 ntBASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 AC009102.3-201ENST00000623118 1491 ntBASIC23.17■■□□□ 1.3
RTCBQ9Y3I0 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 AC098831.1-202ENST00000438821 336 ntBASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 ABCD1P5-201ENST00000445663 754 ntBASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
RTCBQ9Y3I0 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms