Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 AL163051.1-201ENST00000569214 1512 ntBASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 MIR149-201ENST00000384879 89 ntBASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 AC112497.1-201ENST00000624824 639 ntBASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS9D1Q9Y2B5 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.33■□□□□ 0.53
VPS9D1Q9Y2B5 AC009102.3-201ENST00000623118 1491 ntBASIC18.33■□□□□ 0.53
VPS9D1Q9Y2B5 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS9D1Q9Y2B5 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS9D1Q9Y2B5 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
VPS9D1Q9Y2B5 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 HMGA1P5-201ENST00000412453 271 ntBASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 AC010947.1-201ENST00000623454 693 ntBASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 GMCL1P1-201ENST00000463439 1581 ntBASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS9D1Q9Y2B5 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS9D1Q9Y2B5 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms