Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 TSPY20P-201ENST00000450910 630 ntBASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 FAM201B-201ENST00000458407 597 ntBASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 AL023875.1-201ENST00000640777 796 ntBASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 AC073648.6-201ENST00000641589 218 ntBASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCAL1Q9NZC9 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 MYLKP1-201ENST00000509077 1580 ntBASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 MYC-208ENST00000641036 567 ntBASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCAL1Q9NZC9 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 AC128676.1-201ENST00000454392 318 ntBASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.41■□□□□ 0.7
SMARCAL1Q9NZC9 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms