Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 AC091390.4-202ENST00000476426 537 ntBASIC18.32■□□□□ 0.52
SSU72Q9NP77 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.32■□□□□ 0.52
SSU72Q9NP77 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.32■□□□□ 0.52
SSU72Q9NP77 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.32■□□□□ 0.52
SSU72Q9NP77 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SSU72Q9NP77 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SSU72Q9NP77 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
SSU72Q9NP77 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SSU72Q9NP77 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSU72Q9NP77 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSU72Q9NP77 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSU72Q9NP77 AC080080.1-201ENST00000625121 2420 ntBASIC18.32■□□□□ 0.52
SSU72Q9NP77 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SSU72Q9NP77 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.32■□□□□ 0.52
SSU72Q9NP77 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.32■□□□□ 0.52
SSU72Q9NP77 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSU72Q9NP77 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.31■□□□□ 0.52
SSU72Q9NP77 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
SSU72Q9NP77 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.31■□□□□ 0.52
SSU72Q9NP77 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SSU72Q9NP77 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.31■□□□□ 0.52
SSU72Q9NP77 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.31■□□□□ 0.52
SSU72Q9NP77 CKBP1-201ENST00000565489 1086 ntBASIC18.31■□□□□ 0.52
SSU72Q9NP77 AL138781.1-201ENST00000566567 1274 ntBASIC18.31■□□□□ 0.52
SSU72Q9NP77 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.31■□□□□ 0.52
SSU72Q9NP77 MTDHP1-201ENST00000605323 784 ntBASIC18.31■□□□□ 0.52
SSU72Q9NP77 IKBKGP1-201ENST00000612193 1073 ntBASIC18.31■□□□□ 0.52
SSU72Q9NP77 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.31■□□□□ 0.52
SSU72Q9NP77 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
SSU72Q9NP77 AC099398.1-201ENST00000567919 2776 ntBASIC18.31■□□□□ 0.52
SSU72Q9NP77 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSU72Q9NP77 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSU72Q9NP77 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSU72Q9NP77 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SSU72Q9NP77 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SSU72Q9NP77 AL023806.1-201ENST00000603994 1649 ntBASIC18.31■□□□□ 0.52
SSU72Q9NP77 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SSU72Q9NP77 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.3■□□□□ 0.52
SSU72Q9NP77 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SSU72Q9NP77 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SSU72Q9NP77 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
SSU72Q9NP77 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.3■□□□□ 0.52
SSU72Q9NP77 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.3■□□□□ 0.52
SSU72Q9NP77 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.3■□□□□ 0.52
SSU72Q9NP77 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.3■□□□□ 0.52
SSU72Q9NP77 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 KRT8P50-201ENST00000562022 1438 ntBASIC18.3■□□□□ 0.52
SSU72Q9NP77 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SSU72Q9NP77 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.3■□□□□ 0.52
SSU72Q9NP77 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSU72Q9NP77 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 AC098934.4-201ENST00000564127 592 ntBASIC18.29■□□□□ 0.52
SSU72Q9NP77 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 AC093010.1-201ENST00000473625 1624 ntBASIC18.29■□□□□ 0.52
SSU72Q9NP77 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SSU72Q9NP77 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSU72Q9NP77 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms