Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.21■□□□□ 0.67
CDX2Q99626 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDX2Q99626 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.21■□□□□ 0.67
CDX2Q99626 MTCL1P1-201ENST00000446207 792 ntBASIC19.21■□□□□ 0.67
CDX2Q99626 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDX2Q99626 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.21■□□□□ 0.67
CDX2Q99626 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CDX2Q99626 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDX2Q99626 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDX2Q99626 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.21■□□□□ 0.67
CDX2Q99626 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CDX2Q99626 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CDX2Q99626 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CDX2Q99626 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CDX2Q99626 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDX2Q99626 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.2■□□□□ 0.66
CDX2Q99626 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.2■□□□□ 0.66
CDX2Q99626 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.2■□□□□ 0.66
CDX2Q99626 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDX2Q99626 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.2■□□□□ 0.66
CDX2Q99626 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.2■□□□□ 0.66
CDX2Q99626 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDX2Q99626 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CDX2Q99626 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.2■□□□□ 0.66
CDX2Q99626 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.2■□□□□ 0.66
CDX2Q99626 GAPDHP21-201ENST00000450301 1010 ntBASIC19.2■□□□□ 0.66
CDX2Q99626 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CDX2Q99626 RNA5SP421-201ENST00000516864 134 ntBASIC19.2■□□□□ 0.66
CDX2Q99626 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.2■□□□□ 0.66
CDX2Q99626 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.2■□□□□ 0.66
CDX2Q99626 AC025678.2-201ENST00000562061 970 ntBASIC19.2■□□□□ 0.66
CDX2Q99626 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.2■□□□□ 0.66
CDX2Q99626 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.2■□□□□ 0.66
CDX2Q99626 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDX2Q99626 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.19■□□□□ 0.66
CDX2Q99626 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CDX2Q99626 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX2Q99626 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX2Q99626 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX2Q99626 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.19■□□□□ 0.66
CDX2Q99626 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.19■□□□□ 0.66
CDX2Q99626 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.19■□□□□ 0.66
CDX2Q99626 AC087641.1-201ENST00000557561 1021 ntBASIC19.19■□□□□ 0.66
CDX2Q99626 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.19■□□□□ 0.66
CDX2Q99626 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.19■□□□□ 0.66
CDX2Q99626 AL022326.1-202ENST00000641533 845 ntBASIC19.19■□□□□ 0.66
CDX2Q99626 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CDX2Q99626 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.19■□□□□ 0.66
CDX2Q99626 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.19■□□□□ 0.66
CDX2Q99626 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDX2Q99626 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.19■□□□□ 0.66
CDX2Q99626 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.19■□□□□ 0.66
CDX2Q99626 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.19■□□□□ 0.66
CDX2Q99626 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.18■□□□□ 0.66
CDX2Q99626 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
CDX2Q99626 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX2Q99626 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
CDX2Q99626 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CDX2Q99626 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDX2Q99626 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.18■□□□□ 0.66
CDX2Q99626 PMS2P4-201ENST00000412466 1052 ntBASIC19.18■□□□□ 0.66
CDX2Q99626 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDX2Q99626 AC022494.1-201ENST00000466044 728 ntBASIC19.18■□□□□ 0.66
CDX2Q99626 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDX2Q99626 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CDX2Q99626 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.18■□□□□ 0.66
CDX2Q99626 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.18■□□□□ 0.66
CDX2Q99626 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CDX2Q99626 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.18■□□□□ 0.66
CDX2Q99626 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX2Q99626 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CDX2Q99626 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.18■□□□□ 0.66
CDX2Q99626 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.18■□□□□ 0.66
CDX2Q99626 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CDX2Q99626 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CDX2Q99626 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.17■□□□□ 0.66
CDX2Q99626 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.17■□□□□ 0.66
CDX2Q99626 VN2R19P-201ENST00000442399 1052 ntBASIC19.17■□□□□ 0.66
CDX2Q99626 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.17■□□□□ 0.66
CDX2Q99626 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.17■□□□□ 0.66
CDX2Q99626 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 AC004835.2-201ENST00000603762 682 ntBASIC19.17■□□□□ 0.66
CDX2Q99626 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.17■□□□□ 0.66
CDX2Q99626 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.17■□□□□ 0.66
CDX2Q99626 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.17■□□□□ 0.66
CDX2Q99626 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX2Q99626 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.16■□□□□ 0.66
CDX2Q99626 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX2Q99626 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX2Q99626 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX2Q99626 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms