Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
SYNGAP1Q96PV0 AC099336.1-202ENST00000602961 463 ntBASIC20.93■□□□□ 0.94
SYNGAP1Q96PV0 AL353801.3-201ENST00000609898 542 ntBASIC20.93■□□□□ 0.94
SYNGAP1Q96PV0 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.93■□□□□ 0.94
SYNGAP1Q96PV0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SYNGAP1Q96PV0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNGAP1Q96PV0 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SYNGAP1Q96PV0 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SYNGAP1Q96PV0 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.93■□□□□ 0.94
SYNGAP1Q96PV0 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 AL121912.1-201ENST00000603683 238 ntBASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 AL161938.1-201ENST00000569833 2180 ntBASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SYNGAP1Q96PV0 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 VENTXP7-201ENST00000475503 772 ntBASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 SLC25A6P4-201ENST00000586535 553 ntBASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 AC124864.1-201ENST00000623408 392 ntBASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SYNGAP1Q96PV0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 Z98044.1-201ENST00000632503 1764 ntBASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 KRT16P4-201ENST00000453883 522 ntBASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 AL662844.1-201ENST00000546340 181 ntBASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SYNGAP1Q96PV0 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
SYNGAP1Q96PV0 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
SYNGAP1Q96PV0 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SYNGAP1Q96PV0 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SYNGAP1Q96PV0 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SYNGAP1Q96PV0 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SYNGAP1Q96PV0 AL049812.1-201ENST00000432563 2267 ntBASIC20.89■□□□□ 0.94
SYNGAP1Q96PV0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SYNGAP1Q96PV0 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SYNGAP1Q96PV0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms