Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 ZNF444P1-201ENST00000559497 298 ntBASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 AL512353.2-201ENST00000448759 1962 ntBASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.78■□□□□ 0.44
CLIP3Q96DZ5 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 AC005332.1-201ENST00000577698 1310 ntBASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 RASA4DP-201ENST00000460726 1199 ntBASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 AC093458.2-201ENST00000623150 629 ntBASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLIP3Q96DZ5 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.77■□□□□ 0.43
CLIP3Q96DZ5 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLIP3Q96DZ5 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLIP3Q96DZ5 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.77■□□□□ 0.43
CLIP3Q96DZ5 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.77■□□□□ 0.43
CLIP3Q96DZ5 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.77■□□□□ 0.43
CLIP3Q96DZ5 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 AC112497.1-201ENST00000624824 639 ntBASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 AC141586.3-201ENST00000562166 1838 ntBASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLIP3Q96DZ5 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 FP475955.4-201ENST00000623131 1990 ntBASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 AL136038.3-201ENST00000561909 1096 ntBASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 AC083849.1-201ENST00000615227 514 ntBASIC17.75■□□□□ 0.43
CLIP3Q96DZ5 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms