Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 RPS2P55-201ENST00000397318 883 ntBASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 AC107956.1-201ENST00000494359 873 ntBASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 KRT18P16-201ENST00000510337 1294 ntBASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 RARRES2P10-201ENST00000564312 460 ntBASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 KRT17P2-201ENST00000300992 1314 ntBASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
DEPDC4Q8N2C3 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 TNRC18P3-201ENST00000441896 2691 ntBASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 AL596275.1-201ENST00000423464 877 ntBASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 AL353807.1-201ENST00000427475 662 ntBASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 TUBB8P6-201ENST00000436895 1288 ntBASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 KRT16P5-201ENST00000455284 522 ntBASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 MIR4497-201ENST00000583208 89 ntBASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 AC124283.5-201ENST00000624661 1809 ntBASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.16■□□□□ 0.34
DEPDC4Q8N2C3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.15■□□□□ 0.34
DEPDC4Q8N2C3 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms