Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 AL136038.4-201ENST00000603606 1261 ntBASIC17.12■□□□□ 0.33
BEST3Q8N1M1 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC17.12■□□□□ 0.33
BEST3Q8N1M1 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 AC006333.2-201ENST00000607957 2099 ntBASIC17.12■□□□□ 0.33
BEST3Q8N1M1 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BEST3Q8N1M1 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BEST3Q8N1M1 AL391807.1-203ENST00000604392 2365 ntBASIC17.1■□□□□ 0.33
BEST3Q8N1M1 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 HLA-F-220ENST00000434407 884 ntBASIC17.1■□□□□ 0.33
BEST3Q8N1M1 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 LETM1P2-201ENST00000597330 2178 ntBASIC17.1■□□□□ 0.33
BEST3Q8N1M1 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BEST3Q8N1M1 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 AC011498.5-201ENST00000592027 486 ntBASIC17.09■□□□□ 0.33
BEST3Q8N1M1 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BEST3Q8N1M1 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms