Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 EMBP1-201ENST00000458200 901 ntBASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 AC011498.5-201ENST00000592027 486 ntBASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 RASA4DP-201ENST00000460726 1199 ntBASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 IFNL4P1-201ENST00000607083 540 ntBASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SH3RF1Q7Z6J0 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 AL022342.1-201ENST00000400363 863 ntBASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 BX276092.5-203ENST00000456199 560 ntBASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 AL121672.3-201ENST00000608644 468 ntBASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 AL031008.1-201ENST00000619963 541 ntBASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 AC073592.3-201ENST00000625118 1834 ntBASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.1■□□□□ 0.97
SH3RF1Q7Z6J0 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 AC104692.2-201ENST00000603054 253 ntBASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 AL732292.2-201ENST00000609649 430 ntBASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SH3RF1Q7Z6J0 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms