Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 TSPY21P-201ENST00000433481 731 ntBASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 ATP5G2P1-201ENST00000433580 426 ntBASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 RASA4DP-201ENST00000460726 1199 ntBASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 AC092597.1-201ENST00000487352 616 ntBASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 AC012313.10-201ENST00000623509 926 ntBASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 AL354751.1-201ENST00000412768 1863 ntBASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 GPAT2P1-201ENST00000444924 1672 ntBASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC144BQ3MJ40 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC144BQ3MJ40 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC144BQ3MJ40 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.39■■□□□ 1.02
CCDC144BQ3MJ40 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC144BQ3MJ40 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.39■■□□□ 1.02
CCDC144BQ3MJ40 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC144BQ3MJ40 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC144BQ3MJ40 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC144BQ3MJ40 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 AC026396.1-201ENST00000419388 421 ntBASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC144BQ3MJ40 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 NOC2LP1-202ENST00000452600 2235 ntBASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 NPAP1P7-201ENST00000613027 823 ntBASIC21.37■■□□□ 1.01
CCDC144BQ3MJ40 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms