Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 VN2R19P-201ENST00000442399 1052 ntBASIC13.29□□□□□ -0.28
PRKDCP78527 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC13.29□□□□□ -0.28
PRKDCP78527 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC13.29□□□□□ -0.28
PRKDCP78527 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC13.29□□□□□ -0.28
PRKDCP78527 AC097374.2-201ENST00000618617 1306 ntBASIC13.29□□□□□ -0.28
PRKDCP78527 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 DET1-207ENST00000564406 2315 ntTSL 2 BASIC13.29□□□□□ -0.28
PRKDCP78527 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13.29□□□□□ -0.28
PRKDCP78527 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
PRKDCP78527 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.28□□□□□ -0.28
PRKDCP78527 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.28□□□□□ -0.28
PRKDCP78527 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PRKDCP78527 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PRKDCP78527 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC13.28□□□□□ -0.28
PRKDCP78527 MTDHP4-201ENST00000600287 670 ntBASIC13.28□□□□□ -0.28
PRKDCP78527 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.28□□□□□ -0.28
PRKDCP78527 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PRKDCP78527 LINC00628-201ENST00000628516 1289 ntBASIC13.28□□□□□ -0.28
PRKDCP78527 AC026310.3-201ENST00000625186 2373 ntBASIC13.28□□□□□ -0.28
PRKDCP78527 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PRKDCP78527 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PRKDCP78527 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
PRKDCP78527 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PRKDCP78527 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC13.28□□□□□ -0.28
PRKDCP78527 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC13.28□□□□□ -0.28
PRKDCP78527 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.28□□□□□ -0.28
PRKDCP78527 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC13.28□□□□□ -0.28
PRKDCP78527 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC13.28□□□□□ -0.28
PRKDCP78527 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
PRKDCP78527 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
PRKDCP78527 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
PRKDCP78527 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC13.28□□□□□ -0.28
PRKDCP78527 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
PRKDCP78527 GPR89P-201ENST00000407924 1495 ntBASIC13.28□□□□□ -0.28
PRKDCP78527 AC073592.4-201ENST00000623827 446 ntBASIC13.28□□□□□ -0.28
PRKDCP78527 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PRKDCP78527 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
PRKDCP78527 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
PRKDCP78527 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
PRKDCP78527 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
PRKDCP78527 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC13.27□□□□□ -0.28
PRKDCP78527 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
PRKDCP78527 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC13.27□□□□□ -0.28
PRKDCP78527 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PRKDCP78527 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PRKDCP78527 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PRKDCP78527 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
PRKDCP78527 CTNS-203ENST00000399306 803 ntTSL 3 BASIC13.27□□□□□ -0.28
PRKDCP78527 ARSEP1-201ENST00000420443 635 ntBASIC13.27□□□□□ -0.28
PRKDCP78527 HFE2-206ENST00000634927 506 ntTSL 4 BASIC13.27□□□□□ -0.28
PRKDCP78527 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
PRKDCP78527 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
PRKDCP78527 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
PRKDCP78527 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC13.27□□□□□ -0.29
PRKDCP78527 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PRKDCP78527 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PRKDCP78527 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PRKDCP78527 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC13.27□□□□□ -0.29
PRKDCP78527 ELP6-205ENST00000439305 880 ntTSL 2 BASIC13.27□□□□□ -0.29
PRKDCP78527 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
PRKDCP78527 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC13.27□□□□□ -0.29
PRKDCP78527 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PRKDCP78527 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC13.27□□□□□ -0.29
PRKDCP78527 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
PRKDCP78527 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC13.26□□□□□ -0.29
PRKDCP78527 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC13.26□□□□□ -0.29
PRKDCP78527 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC13.26□□□□□ -0.29
PRKDCP78527 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC13.26□□□□□ -0.29
PRKDCP78527 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC13.26□□□□□ -0.29
PRKDCP78527 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC13.26□□□□□ -0.29
PRKDCP78527 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13.26□□□□□ -0.29
PRKDCP78527 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC13.26□□□□□ -0.29
PRKDCP78527 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 NARF-204ENST00000390006 1766 ntTSL 2 BASIC13.26□□□□□ -0.29
PRKDCP78527 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
PRKDCP78527 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
PRKDCP78527 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 CCND1-203ENST00000536559 553 ntTSL 3 BASIC13.26□□□□□ -0.29
PRKDCP78527 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
PRKDCP78527 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
PRKDCP78527 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC13.26□□□□□ -0.29
PRKDCP78527 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.26□□□□□ -0.29
PRKDCP78527 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.26□□□□□ -0.29
PRKDCP78527 AC236430.1-201ENST00000402231 743 ntBASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms