Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 AL357033.4-201ENST00000617703 1807 ntBASIC25.46■■□□□ 1.67
MSH6P52701 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC25.46■■□□□ 1.67
MSH6P52701 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC25.46■■□□□ 1.67
MSH6P52701 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
MSH6P52701 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC25.45■■□□□ 1.67
MSH6P52701 TP73-202ENST00000354437 2140 ntTSL 5 BASIC25.45■■□□□ 1.67
MSH6P52701 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
MSH6P52701 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
MSH6P52701 AC244107.1-201ENST00000442033 332 ntBASIC25.45■■□□□ 1.67
MSH6P52701 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC25.45■■□□□ 1.67
MSH6P52701 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC25.45■■□□□ 1.67
MSH6P52701 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC25.45■■□□□ 1.67
MSH6P52701 AC239800.4-201ENST00000603712 296 ntBASIC25.45■■□□□ 1.67
MSH6P52701 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
MSH6P52701 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.67
MSH6P52701 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
MSH6P52701 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC25.45■■□□□ 1.66
MSH6P52701 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC25.45■■□□□ 1.66
MSH6P52701 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
MSH6P52701 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC25.45■■□□□ 1.66
MSH6P52701 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC25.45■■□□□ 1.66
MSH6P52701 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC25.45■■□□□ 1.66
MSH6P52701 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC25.45■■□□□ 1.66
MSH6P52701 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
MSH6P52701 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
MSH6P52701 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
MSH6P52701 TCF3P1-201ENST00000423021 1937 ntBASIC25.45■■□□□ 1.66
MSH6P52701 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC25.45■■□□□ 1.66
MSH6P52701 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC25.44■■□□□ 1.66
MSH6P52701 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC25.44■■□□□ 1.66
MSH6P52701 AC068472.1-201ENST00000474589 881 ntBASIC25.44■■□□□ 1.66
MSH6P52701 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC25.44■■□□□ 1.66
MSH6P52701 MTDHP4-201ENST00000600287 670 ntBASIC25.44■■□□□ 1.66
MSH6P52701 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC25.44■■□□□ 1.66
MSH6P52701 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC25.44■■□□□ 1.66
MSH6P52701 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
MSH6P52701 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC25.44■■□□□ 1.66
MSH6P52701 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC25.44■■□□□ 1.66
MSH6P52701 MCCD1P2-201ENST00000423228 335 ntBASIC25.44■■□□□ 1.66
MSH6P52701 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC25.44■■□□□ 1.66
MSH6P52701 CFL1-202ENST00000524553 860 ntTSL 2 BASIC25.44■■□□□ 1.66
MSH6P52701 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC25.44■■□□□ 1.66
MSH6P52701 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC25.44■■□□□ 1.66
MSH6P52701 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC25.44■■□□□ 1.66
MSH6P52701 AC064836.3-201ENST00000607928 673 ntBASIC25.44■■□□□ 1.66
MSH6P52701 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC25.43■■□□□ 1.66
MSH6P52701 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC25.43■■□□□ 1.66
MSH6P52701 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
MSH6P52701 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
MSH6P52701 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC25.43■■□□□ 1.66
MSH6P52701 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
MSH6P52701 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
MSH6P52701 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
MSH6P52701 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
MSH6P52701 PNMT-202ENST00000394246 821 ntTSL 2 BASIC25.43■■□□□ 1.66
MSH6P52701 AC254562.1-201ENST00000417586 456 ntBASIC25.43■■□□□ 1.66
MSH6P52701 LAGE3P1-201ENST00000425356 484 ntBASIC25.43■■□□□ 1.66
MSH6P52701 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
MSH6P52701 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC25.43■■□□□ 1.66
MSH6P52701 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC25.43■■□□□ 1.66
MSH6P52701 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC25.43■■□□□ 1.66
MSH6P52701 AC005829.1-201ENST00000570002 483 ntBASIC25.43■■□□□ 1.66
MSH6P52701 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
MSH6P52701 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
MSH6P52701 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC25.42■■□□□ 1.66
MSH6P52701 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC25.42■■□□□ 1.66
MSH6P52701 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
MSH6P52701 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
MSH6P52701 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH6P52701 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC25.42■■□□□ 1.66
MSH6P52701 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH6P52701 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC25.42■■□□□ 1.66
MSH6P52701 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH6P52701 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC25.42■■□□□ 1.66
MSH6P52701 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC25.42■■□□□ 1.66
MSH6P52701 AL645939.2-201ENST00000427340 991 ntBASIC25.42■■□□□ 1.66
MSH6P52701 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC25.42■■□□□ 1.66
MSH6P52701 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH6P52701 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH6P52701 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC25.42■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms