Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN9P43378 AL441883.1-201ENST00000566170 1045 ntBASIC19.17■□□□□ 0.66
PTPN9P43378 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.17■□□□□ 0.66
PTPN9P43378 AC140113.3-201ENST00000605663 199 ntBASIC19.17■□□□□ 0.66
PTPN9P43378 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.17■□□□□ 0.66
PTPN9P43378 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
PTPN9P43378 AC093677.2-201ENST00000600169 1863 ntBASIC19.17■□□□□ 0.66
PTPN9P43378 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN9P43378 ESPNP-201ENST00000270691 2015 ntBASIC19.17■□□□□ 0.66
PTPN9P43378 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
PTPN9P43378 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.16■□□□□ 0.66
PTPN9P43378 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.16■□□□□ 0.66
PTPN9P43378 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PTPN9P43378 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.16■□□□□ 0.66
PTPN9P43378 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 KRT18P57-201ENST00000443599 1254 ntBASIC19.16■□□□□ 0.66
PTPN9P43378 YBX1P2-201ENST00000489612 999 ntBASIC19.16■□□□□ 0.66
PTPN9P43378 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.16■□□□□ 0.66
PTPN9P43378 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.16■□□□□ 0.66
PTPN9P43378 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.16■□□□□ 0.66
PTPN9P43378 AC139887.4-201ENST00000607877 719 ntBASIC19.16■□□□□ 0.66
PTPN9P43378 AL157888.1-201ENST00000631930 593 ntBASIC19.16■□□□□ 0.66
PTPN9P43378 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PTPN9P43378 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.16■□□□□ 0.66
PTPN9P43378 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PTPN9P43378 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN9P43378 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 AC135776.1-201ENST00000319817 2481 ntBASIC19.15■□□□□ 0.66
PTPN9P43378 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
PTPN9P43378 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
PTPN9P43378 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN9P43378 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.15■□□□□ 0.66
PTPN9P43378 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
PTPN9P43378 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
PTPN9P43378 AC117947.1-201ENST00000427448 529 ntBASIC19.15■□□□□ 0.66
PTPN9P43378 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 AC034232.1-201ENST00000506026 1064 ntBASIC19.15■□□□□ 0.66
PTPN9P43378 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
PTPN9P43378 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.15■□□□□ 0.66
PTPN9P43378 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.15■□□□□ 0.66
PTPN9P43378 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
PTPN9P43378 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN9P43378 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN9P43378 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.15■□□□□ 0.66
PTPN9P43378 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.15■□□□□ 0.66
PTPN9P43378 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.15■□□□□ 0.66
PTPN9P43378 AC011558.1-201ENST00000623459 338 ntBASIC19.15■□□□□ 0.66
PTPN9P43378 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
PTPN9P43378 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN9P43378 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN9P43378 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.15■□□□□ 0.66
PTPN9P43378 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.15■□□□□ 0.66
PTPN9P43378 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PTPN9P43378 AC099343.3-201ENST00000605834 2503 ntBASIC19.14■□□□□ 0.65
PTPN9P43378 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN9P43378 ABALON-201ENST00000629058 1903 ntBASIC19.14■□□□□ 0.65
PTPN9P43378 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN9P43378 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN9P43378 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN9P43378 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN9P43378 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
PTPN9P43378 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
PTPN9P43378 PVRIG2P-201ENST00000435460 978 ntBASIC19.14■□□□□ 0.65
PTPN9P43378 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN9P43378 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN9P43378 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.14■□□□□ 0.65
PTPN9P43378 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.14■□□□□ 0.65
PTPN9P43378 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms