Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC23.12■■□□□ 1.29
RFC4P35249 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RFC4P35249 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC23.12■■□□□ 1.29
RFC4P35249 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC23.12■■□□□ 1.29
RFC4P35249 AL356488.2-201ENST00000602755 427 ntBASIC23.12■■□□□ 1.29
RFC4P35249 AC140113.2-201ENST00000604370 208 ntBASIC23.12■■□□□ 1.29
RFC4P35249 FAM197Y3-203ENST00000618346 717 ntBASIC23.12■■□□□ 1.29
RFC4P35249 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RFC4P35249 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RFC4P35249 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC23.12■■□□□ 1.29
RFC4P35249 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
RFC4P35249 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RFC4P35249 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC23.12■■□□□ 1.29
RFC4P35249 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RFC4P35249 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RFC4P35249 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RFC4P35249 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC23.11■■□□□ 1.29
RFC4P35249 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RFC4P35249 AP005117.1-201ENST00000584346 1413 ntBASIC23.11■■□□□ 1.29
RFC4P35249 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RFC4P35249 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RFC4P35249 MIR149-201ENST00000384879 89 ntBASIC23.11■■□□□ 1.29
RFC4P35249 MED15P5-201ENST00000423150 992 ntBASIC23.11■■□□□ 1.29
RFC4P35249 RPS2P1-201ENST00000434010 821 ntBASIC23.11■■□□□ 1.29
RFC4P35249 DANCR-204ENST00000444958 709 ntTSL 3 BASIC23.11■■□□□ 1.29
RFC4P35249 MEG3-211ENST00000452514 461 ntTSL 3 BASIC23.11■■□□□ 1.29
RFC4P35249 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
RFC4P35249 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC23.11■■□□□ 1.29
RFC4P35249 PAM16-208ENST00000573553 722 ntTSL 2 BASIC23.11■■□□□ 1.29
RFC4P35249 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC23.11■■□□□ 1.29
RFC4P35249 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
RFC4P35249 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC23.11■■□□□ 1.29
RFC4P35249 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
RFC4P35249 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RFC4P35249 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RFC4P35249 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.1■■□□□ 1.29
RFC4P35249 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RFC4P35249 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RFC4P35249 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RFC4P35249 MTMR9LP-203ENST00000426597 1545 ntBASIC23.1■■□□□ 1.29
RFC4P35249 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RFC4P35249 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC23.1■■□□□ 1.29
RFC4P35249 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RFC4P35249 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RFC4P35249 UPF3AP3-201ENST00000420996 769 ntBASIC23.1■■□□□ 1.29
RFC4P35249 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC23.1■■□□□ 1.29
RFC4P35249 SART3-203ENST00000546611 1184 ntBASIC23.1■■□□□ 1.29
RFC4P35249 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC23.1■■□□□ 1.29
RFC4P35249 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
RFC4P35249 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RFC4P35249 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC23.1■■□□□ 1.29
RFC4P35249 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC23.1■■□□□ 1.29
RFC4P35249 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RFC4P35249 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RFC4P35249 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC23.1■■□□□ 1.29
RFC4P35249 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC23.09■■□□□ 1.29
RFC4P35249 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC23.09■■□□□ 1.29
RFC4P35249 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
RFC4P35249 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC23.09■■□□□ 1.29
RFC4P35249 HLA-J-201ENST00000462773 1622 ntBASIC23.09■■□□□ 1.29
RFC4P35249 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC23.09■■□□□ 1.29
RFC4P35249 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC23.09■■□□□ 1.29
RFC4P35249 AC092910.1-201ENST00000482027 1129 ntBASIC23.09■■□□□ 1.29
RFC4P35249 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC23.09■■□□□ 1.29
RFC4P35249 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC23.09■■□□□ 1.29
RFC4P35249 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC23.09■■□□□ 1.29
RFC4P35249 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC23.09■■□□□ 1.29
RFC4P35249 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC23.09■■□□□ 1.29
RFC4P35249 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC23.09■■□□□ 1.29
RFC4P35249 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
RFC4P35249 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC23.09■■□□□ 1.29
RFC4P35249 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
RFC4P35249 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RFC4P35249 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RFC4P35249 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC23.08■■□□□ 1.29
RFC4P35249 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC23.08■■□□□ 1.29
RFC4P35249 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RFC4P35249 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RFC4P35249 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
RFC4P35249 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RFC4P35249 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RFC4P35249 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RFC4P35249 FUOM-202ENST00000368551 628 ntTSL 3 BASIC23.08■■□□□ 1.29
RFC4P35249 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RFC4P35249 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RFC4P35249 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC23.08■■□□□ 1.29
RFC4P35249 GGCT-205ENST00000409436 954 ntTSL 3 BASIC23.08■■□□□ 1.29
RFC4P35249 AL591424.1-201ENST00000442569 1213 ntBASIC23.08■■□□□ 1.29
RFC4P35249 RBSN-204ENST00000449050 903 ntTSL 2 BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms