Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDH3P22223 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.07■□□□□ 0.48
CDH3P22223 AL441883.1-201ENST00000566170 1045 ntBASIC18.07■□□□□ 0.48
CDH3P22223 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.07■□□□□ 0.48
CDH3P22223 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
CDH3P22223 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.07■□□□□ 0.48
CDH3P22223 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDH3P22223 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
CDH3P22223 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDH3P22223 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CDH3P22223 AC106820.2-201ENST00000563775 3264 ntBASIC18.07■□□□□ 0.48
CDH3P22223 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDH3P22223 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.07■□□□□ 0.48
CDH3P22223 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDH3P22223 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDH3P22223 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CDH3P22223 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDH3P22223 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.07■□□□□ 0.48
CDH3P22223 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CDH3P22223 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.06■□□□□ 0.48
CDH3P22223 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.06■□□□□ 0.48
CDH3P22223 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.06■□□□□ 0.48
CDH3P22223 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.06■□□□□ 0.48
CDH3P22223 HOMER2P1-201ENST00000455653 964 ntBASIC18.06■□□□□ 0.48
CDH3P22223 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.06■□□□□ 0.48
CDH3P22223 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.06■□□□□ 0.48
CDH3P22223 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.06■□□□□ 0.48
CDH3P22223 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.06■□□□□ 0.48
CDH3P22223 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CDH3P22223 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CDH3P22223 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.06■□□□□ 0.48
CDH3P22223 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDH3P22223 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.05■□□□□ 0.48
CDH3P22223 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CDH3P22223 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.05■□□□□ 0.48
CDH3P22223 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.05■□□□□ 0.48
CDH3P22223 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.05■□□□□ 0.48
CDH3P22223 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.05■□□□□ 0.48
CDH3P22223 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.05■□□□□ 0.48
CDH3P22223 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.05■□□□□ 0.48
CDH3P22223 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.05■□□□□ 0.48
CDH3P22223 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
CDH3P22223 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.05■□□□□ 0.48
CDH3P22223 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
CDH3P22223 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDH3P22223 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.04■□□□□ 0.48
CDH3P22223 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CDH3P22223 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH3P22223 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH3P22223 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH3P22223 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH3P22223 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CDH3P22223 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH3P22223 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CDH3P22223 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH3P22223 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.04■□□□□ 0.48
CDH3P22223 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH3P22223 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CDH3P22223 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.04■□□□□ 0.48
CDH3P22223 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CDH3P22223 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDH3P22223 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CDH3P22223 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDH3P22223 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CDH3P22223 FAM8A6P-201ENST00000407496 1135 ntBASIC18.04■□□□□ 0.48
CDH3P22223 AL359075.1-203ENST00000462729 1002 ntBASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms