Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 MIR1238-201ENST00000408483 83 ntBASIC17.86■□□□□ 0.45
CLDN9O95484 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CLDN9O95484 AL390955.1-201ENST00000428694 934 ntBASIC17.86■□□□□ 0.45
CLDN9O95484 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.86■□□□□ 0.45
CLDN9O95484 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.86■□□□□ 0.45
CLDN9O95484 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.86■□□□□ 0.45
CLDN9O95484 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CLDN9O95484 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CLDN9O95484 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLDN9O95484 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLDN9O95484 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.86■□□□□ 0.45
CLDN9O95484 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
CLDN9O95484 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CLDN9O95484 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN9O95484 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.85■□□□□ 0.45
CLDN9O95484 ESPNP-201ENST00000270691 2015 ntBASIC17.85■□□□□ 0.45
CLDN9O95484 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN9O95484 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN9O95484 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN9O95484 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CLDN9O95484 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CLDN9O95484 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CLDN9O95484 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN9O95484 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN9O95484 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN9O95484 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.85■□□□□ 0.45
CLDN9O95484 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.85■□□□□ 0.45
CLDN9O95484 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.85■□□□□ 0.45
CLDN9O95484 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN9O95484 BX088651.1-201ENST00000540551 451 ntBASIC17.85■□□□□ 0.45
CLDN9O95484 AC092338.2-201ENST00000568827 1415 ntBASIC17.85■□□□□ 0.45
CLDN9O95484 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.85■□□□□ 0.45
CLDN9O95484 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN9O95484 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.85■□□□□ 0.45
CLDN9O95484 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.85■□□□□ 0.45
CLDN9O95484 AC116562.4-202ENST00000641738 218 ntBASIC17.85■□□□□ 0.45
CLDN9O95484 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLDN9O95484 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.85■□□□□ 0.45
CLDN9O95484 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN9O95484 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN9O95484 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
CLDN9O95484 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN9O95484 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN9O95484 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CLDN9O95484 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CLDN9O95484 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.84■□□□□ 0.45
CLDN9O95484 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.84■□□□□ 0.45
CLDN9O95484 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CLDN9O95484 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
CLDN9O95484 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.84■□□□□ 0.45
CLDN9O95484 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN9O95484 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.84■□□□□ 0.45
CLDN9O95484 AL355075.4-201ENST00000554988 638 ntBASIC17.84■□□□□ 0.45
CLDN9O95484 C2orf69P3-201ENST00000565542 1120 ntBASIC17.84■□□□□ 0.45
CLDN9O95484 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.84■□□□□ 0.45
CLDN9O95484 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CLDN9O95484 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CLDN9O95484 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.84■□□□□ 0.45
CLDN9O95484 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.84■□□□□ 0.45
CLDN9O95484 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.84■□□□□ 0.45
CLDN9O95484 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CLDN9O95484 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN9O95484 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN9O95484 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN9O95484 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN9O95484 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN9O95484 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.83■□□□□ 0.45
CLDN9O95484 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN9O95484 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN9O95484 KRT8P7-201ENST00000533003 1432 ntBASIC17.83■□□□□ 0.45
CLDN9O95484 HOXB1-202ENST00000577092 1414 ntBASIC17.83■□□□□ 0.45
CLDN9O95484 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.83■□□□□ 0.45
CLDN9O95484 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CLDN9O95484 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN9O95484 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN9O95484 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN9O95484 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms