Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SHOX2O60902 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.49■□□□□ 0.55
SHOX2O60902 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SHOX2O60902 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.49■□□□□ 0.55
SHOX2O60902 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.49■□□□□ 0.55
SHOX2O60902 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
SHOX2O60902 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
SHOX2O60902 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 AL357033.4-201ENST00000617703 1807 ntBASIC18.49■□□□□ 0.55
SHOX2O60902 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHOX2O60902 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.49■□□□□ 0.55
SHOX2O60902 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SHOX2O60902 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SHOX2O60902 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.48■□□□□ 0.55
SHOX2O60902 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.48■□□□□ 0.55
SHOX2O60902 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 KRT8P32-201ENST00000512863 1461 ntBASIC18.48■□□□□ 0.55
SHOX2O60902 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.48■□□□□ 0.55
SHOX2O60902 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.48■□□□□ 0.55
SHOX2O60902 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
SHOX2O60902 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.48■□□□□ 0.55
SHOX2O60902 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
SHOX2O60902 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.48■□□□□ 0.55
SHOX2O60902 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.48■□□□□ 0.55
SHOX2O60902 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.48■□□□□ 0.55
SHOX2O60902 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SHOX2O60902 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
SHOX2O60902 LINC01126-201ENST00000623515 1646 ntBASIC18.48■□□□□ 0.55
SHOX2O60902 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SHOX2O60902 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.48■□□□□ 0.55
SHOX2O60902 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
SHOX2O60902 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHOX2O60902 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.48■□□□□ 0.55
SHOX2O60902 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
SHOX2O60902 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SHOX2O60902 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SHOX2O60902 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC18.47■□□□□ 0.55
SHOX2O60902 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.47■□□□□ 0.55
SHOX2O60902 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
SHOX2O60902 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.47■□□□□ 0.55
SHOX2O60902 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.47■□□□□ 0.55
SHOX2O60902 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.47■□□□□ 0.55
SHOX2O60902 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SHOX2O60902 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.47■□□□□ 0.55
SHOX2O60902 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 PHGDH-209ENST00000641074 1780 ntBASIC18.47■□□□□ 0.55
SHOX2O60902 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.47■□□□□ 0.55
SHOX2O60902 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SHOX2O60902 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.47■□□□□ 0.55
SHOX2O60902 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
SHOX2O60902 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHOX2O60902 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHOX2O60902 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.46■□□□□ 0.55
SHOX2O60902 AC090340.1-201ENST00000620778 4980 ntBASIC18.46■□□□□ 0.55
SHOX2O60902 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHOX2O60902 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHOX2O60902 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
SHOX2O60902 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
SHOX2O60902 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHOX2O60902 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
SHOX2O60902 NTF6G-201ENST00000591094 616 ntBASIC18.46■□□□□ 0.55
SHOX2O60902 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHOX2O60902 AL355312.1-201ENST00000407115 2176 ntBASIC18.46■□□□□ 0.55
SHOX2O60902 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SHOX2O60902 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SHOX2O60902 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SHOX2O60902 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
SHOX2O60902 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SHOX2O60902 MYLKP1-201ENST00000509077 1580 ntBASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms