Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.38■□□□□ 0.53
PHGDHO43175 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.38■□□□□ 0.53
PHGDHO43175 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PHGDHO43175 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.38■□□□□ 0.53
PHGDHO43175 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PHGDHO43175 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.37■□□□□ 0.53
PHGDHO43175 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PHGDHO43175 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 RPS2P55-201ENST00000397318 883 ntBASIC18.37■□□□□ 0.53
PHGDHO43175 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 AC107956.1-201ENST00000494359 873 ntBASIC18.37■□□□□ 0.53
PHGDHO43175 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 AC097488.1-201ENST00000507834 756 ntBASIC18.37■□□□□ 0.53
PHGDHO43175 KRT18P41-201ENST00000518924 1277 ntBASIC18.37■□□□□ 0.53
PHGDHO43175 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.37■□□□□ 0.53
PHGDHO43175 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 DGCR10-201ENST00000609839 495 ntBASIC18.37■□□□□ 0.53
PHGDHO43175 AC113410.3-201ENST00000623366 203 ntBASIC18.37■□□□□ 0.53
PHGDHO43175 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PHGDHO43175 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.37■□□□□ 0.53
PHGDHO43175 AC008764.6-201ENST00000595909 2069 ntBASIC18.37■□□□□ 0.53
PHGDHO43175 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PHGDHO43175 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.37■□□□□ 0.53
PHGDHO43175 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PHGDHO43175 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
PHGDHO43175 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.36■□□□□ 0.53
PHGDHO43175 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PHGDHO43175 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PHGDHO43175 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 MIR564-202ENST00000385049 94 ntBASIC18.36■□□□□ 0.53
PHGDHO43175 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.36■□□□□ 0.53
PHGDHO43175 GCSHP5-201ENST00000443090 522 ntBASIC18.36■□□□□ 0.53
PHGDHO43175 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.36■□□□□ 0.53
PHGDHO43175 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.36■□□□□ 0.53
PHGDHO43175 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.36■□□□□ 0.53
PHGDHO43175 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.36■□□□□ 0.53
PHGDHO43175 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.36■□□□□ 0.53
PHGDHO43175 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PHGDHO43175 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PHGDHO43175 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.35■□□□□ 0.53
PHGDHO43175 REXO1L9P-201ENST00000604264 2108 ntBASIC18.35■□□□□ 0.53
PHGDHO43175 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.35■□□□□ 0.53
PHGDHO43175 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 ABHD17AP1-201ENST00000358206 933 ntBASIC18.35■□□□□ 0.53
PHGDHO43175 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.35■□□□□ 0.53
PHGDHO43175 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.35■□□□□ 0.53
PHGDHO43175 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.35■□□□□ 0.53
PHGDHO43175 REXO1L10P-201ENST00000615707 1290 ntBASIC18.35■□□□□ 0.53
PHGDHO43175 REXO1L12P-201ENST00000622156 912 ntBASIC18.35■□□□□ 0.53
PHGDHO43175 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PHGDHO43175 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.35■□□□□ 0.53
PHGDHO43175 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.35■□□□□ 0.53
PHGDHO43175 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.35■□□□□ 0.53
PHGDHO43175 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PHGDHO43175 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms