Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 METTL26-205ENST00000397666 726 ntTSL 2 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 MTCL1P1-201ENST00000446207 792 ntBASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 RNF34-208ENST00000555076 593 ntTSL 3 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 AC006557.2-201ENST00000592985 1240 ntBASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.37■■□□□ 1.01
TMEM88BA6NKF7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TMEM88BA6NKF7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 AL139400.1-201ENST00000366220 510 ntBASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 AC073621.1-201ENST00000392730 636 ntBASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 CTNS-203ENST00000399306 803 ntTSL 3 BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 AC004449.1-201ENST00000564240 433 ntBASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TMEM88BA6NKF7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 CRYGEP-201ENST00000412192 528 ntBASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 KRT8P50-201ENST00000562022 1438 ntBASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC21.34■■□□□ 1.01
TMEM88BA6NKF7 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms