Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 MIR1233-2-201ENST00000408138 82 ntBASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 MIR1233-1-201ENST00000408722 82 ntBASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHGA1Q9Y5H4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 AC008608.2-201ENST00000606089 416 ntBASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDHGA1Q9Y5H4 PMS2P7-201ENST00000506558 1336 ntBASIC17.71■□□□□ 0.42
PCDHGA1Q9Y5H4 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
PCDHGA1Q9Y5H4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 AC018712.1-201ENST00000455767 687 ntBASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 AC092865.5-201ENST00000545435 363 ntBASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
PCDHGA1Q9Y5H4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDHGA1Q9Y5H4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms