Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTCBQ9Y3I0 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC23.24■■□□□ 1.31
RTCBQ9Y3I0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.24■■□□□ 1.31
RTCBQ9Y3I0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
RTCBQ9Y3I0 AC125437.2-201ENST00000625180 2167 ntBASIC23.24■■□□□ 1.31
RTCBQ9Y3I0 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
RTCBQ9Y3I0 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC23.24■■□□□ 1.31
RTCBQ9Y3I0 INTS4P1-201ENST00000438455 1935 ntBASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 NFYC-AS1-201ENST00000606277 1687 ntBASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 AC021087.4-201ENST00000563761 564 ntBASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 AC055717.3-201ENST00000622967 595 ntBASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
RTCBQ9Y3I0 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 MIR149-201ENST00000384879 89 ntBASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 DANCR-204ENST00000444958 709 ntTSL 3 BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 MEG3-211ENST00000452514 461 ntTSL 3 BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 PAM16-208ENST00000573553 722 ntTSL 2 BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 FAM197Y3-203ENST00000618346 717 ntBASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 MTMR9LP-203ENST00000426597 1545 ntBASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC23.22■■□□□ 1.31
RTCBQ9Y3I0 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 AC140113.2-201ENST00000604370 208 ntBASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 AP005117.1-201ENST00000584346 1413 ntBASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
RTCBQ9Y3I0 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 MED15P5-201ENST00000423150 992 ntBASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 RPS2P1-201ENST00000434010 821 ntBASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 AL356488.2-201ENST00000602755 427 ntBASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTCBQ9Y3I0 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTCBQ9Y3I0 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms