Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 AC006058.3-201ENST00000606217 1069 ntBASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 AC069544.1-201ENST00000609399 999 ntBASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 KRT8P3-201ENST00000519669 1449 ntBASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 AL645608.8-201ENST00000606034 2086 ntBASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCAL1Q9NZC9 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 RCC2P3-201ENST00000418112 1537 ntBASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 MTDHP1-201ENST00000605323 784 ntBASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 AC004264.1-201ENST00000608354 794 ntBASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCAL1Q9NZC9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCAL1Q9NZC9 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 AC138932.1-201ENST00000534164 6830 ntBASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 AC012317.2-201ENST00000623305 2251 ntBASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
SMARCAL1Q9NZC9 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms