Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 AC233723.2-201ENST00000623798 2106 ntBASIC17.11■□□□□ 0.33
CHD8Q9HCK8 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.11■□□□□ 0.33
CHD8Q9HCK8 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 AC034236.2-201ENST00000606662 1610 ntBASIC17.1■□□□□ 0.33
CHD8Q9HCK8 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHD8Q9HCK8 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 LINC01521-201ENST00000504184 1943 ntBASIC17.09■□□□□ 0.33
CHD8Q9HCK8 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.09■□□□□ 0.33
CHD8Q9HCK8 AC025048.6-201ENST00000634326 1161 ntBASIC17.09■□□□□ 0.33
CHD8Q9HCK8 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 VN2R19P-201ENST00000442399 1052 ntBASIC17.09■□□□□ 0.33
CHD8Q9HCK8 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHD8Q9HCK8 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 AC125634.1-201ENST00000438758 1403 ntBASIC17.08■□□□□ 0.33
CHD8Q9HCK8 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 AC073621.1-201ENST00000392730 636 ntBASIC17.08■□□□□ 0.33
CHD8Q9HCK8 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 AL358472.5-202ENST00000641448 1267 ntBASIC17.08■□□□□ 0.33
CHD8Q9HCK8 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CHD8Q9HCK8 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.08■□□□□ 0.32
CHD8Q9HCK8 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.08■□□□□ 0.32
CHD8Q9HCK8 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHD8Q9HCK8 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.08■□□□□ 0.32
CHD8Q9HCK8 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms