Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPENQ96T58 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPENQ96T58 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.63■□□□□ 0.25
SPENQ96T58 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SPENQ96T58 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.63■□□□□ 0.25
SPENQ96T58 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SPENQ96T58 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.63■□□□□ 0.25
SPENQ96T58 AC008608.2-201ENST00000606089 416 ntBASIC16.63■□□□□ 0.25
SPENQ96T58 IGHV3-41-201ENST00000613121 348 ntBASIC16.63■□□□□ 0.25
SPENQ96T58 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.63■□□□□ 0.25
SPENQ96T58 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.63■□□□□ 0.25
SPENQ96T58 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
SPENQ96T58 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SPENQ96T58 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPENQ96T58 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPENQ96T58 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.63■□□□□ 0.25
SPENQ96T58 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.63■□□□□ 0.25
SPENQ96T58 AC098831.1-202ENST00000438821 336 ntBASIC16.63■□□□□ 0.25
SPENQ96T58 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.63■□□□□ 0.25
SPENQ96T58 RN7SL606P-201ENST00000472779 293 ntBASIC16.63■□□□□ 0.25
SPENQ96T58 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.63■□□□□ 0.25
SPENQ96T58 AC104390.1-201ENST00000555663 520 ntBASIC16.63■□□□□ 0.25
SPENQ96T58 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.63■□□□□ 0.25
SPENQ96T58 MIR5100-201ENST00000579544 119 ntBASIC16.63■□□□□ 0.25
SPENQ96T58 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.63■□□□□ 0.25
SPENQ96T58 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPENQ96T58 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPENQ96T58 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPENQ96T58 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.63■□□□□ 0.25
SPENQ96T58 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPENQ96T58 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.63■□□□□ 0.25
SPENQ96T58 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.63■□□□□ 0.25
SPENQ96T58 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SPENQ96T58 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SPENQ96T58 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SPENQ96T58 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 AL035633.1-201ENST00000406139 838 ntBASIC16.62■□□□□ 0.25
SPENQ96T58 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
SPENQ96T58 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.62■□□□□ 0.25
SPENQ96T58 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
SPENQ96T58 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SPENQ96T58 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.62■□□□□ 0.25
SPENQ96T58 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.62■□□□□ 0.25
SPENQ96T58 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 MED15P5-201ENST00000423150 992 ntBASIC16.62■□□□□ 0.25
SPENQ96T58 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.62■□□□□ 0.25
SPENQ96T58 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.62■□□□□ 0.25
SPENQ96T58 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.62■□□□□ 0.25
SPENQ96T58 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.62■□□□□ 0.25
SPENQ96T58 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
SPENQ96T58 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPENQ96T58 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 AC005104.2-201ENST00000427818 678 ntBASIC16.61■□□□□ 0.25
SPENQ96T58 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.61■□□□□ 0.25
SPENQ96T58 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.61■□□□□ 0.25
SPENQ96T58 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SPENQ96T58 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.61■□□□□ 0.25
SPENQ96T58 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.61■□□□□ 0.25
SPENQ96T58 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SPENQ96T58 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.61■□□□□ 0.25
SPENQ96T58 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.61■□□□□ 0.25
SPENQ96T58 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SPENQ96T58 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.61■□□□□ 0.25
SPENQ96T58 TERC-201ENST00000602385 541 ntBASIC16.61■□□□□ 0.25
SPENQ96T58 AL139424.1-201ENST00000607572 797 ntBASIC16.61■□□□□ 0.25
SPENQ96T58 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SPENQ96T58 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.6■□□□□ 0.25
SPENQ96T58 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.6■□□□□ 0.25
SPENQ96T58 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.6■□□□□ 0.25
SPENQ96T58 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SPENQ96T58 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SPENQ96T58 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SPENQ96T58 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SPENQ96T58 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SPENQ96T58 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SPENQ96T58 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms