Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLHC1Q8NHS4 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 SLC25A1P4-201ENST00000567977 778 ntBASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 AP000692.2-201ENST00000608391 879 ntBASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 MYC-208ENST00000641036 567 ntBASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.76■□□□□ 0.43
CLHC1Q8NHS4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 AL162741.1-201ENST00000565563 1558 ntBASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLHC1Q8NHS4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 MFAP1P1-201ENST00000442257 1255 ntBASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 ESPNP-201ENST00000270691 2015 ntBASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLHC1Q8NHS4 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms