Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 AC112497.1-201ENST00000624824 639 ntBASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 AC009113.1-201ENST00000570267 2443 ntBASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 AL133373.2-201ENST00000623187 2828 ntBASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.26■□□□□ 0.67
RFWD3Q6PCD5 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 CROCCP3-202ENST00000420820 1947 ntBASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 AL031133.1-201ENST00000406807 723 ntBASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 SPDYE15P-201ENST00000424157 909 ntBASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 SEC1P-202ENST00000473944 940 ntBASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 MTMR9LP-203ENST00000426597 1545 ntBASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RFWD3Q6PCD5 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 AL357033.4-201ENST00000617703 1807 ntBASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 KRT18P23-201ENST00000435622 1283 ntBASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.24■□□□□ 0.67
RFWD3Q6PCD5 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 STARP1-201ENST00000397973 869 ntBASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RFWD3Q6PCD5 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms