Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RC3H1Q5TC82 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC23.22■■□□□ 1.31
RC3H1Q5TC82 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RC3H1Q5TC82 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RC3H1Q5TC82 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RC3H1Q5TC82 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 AC034105.1-201ENST00000563488 319 ntBASIC23.21■■□□□ 1.31
RC3H1Q5TC82 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RC3H1Q5TC82 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 AC104109.2-201ENST00000602919 1418 ntBASIC23.2■■□□□ 1.3
RC3H1Q5TC82 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 AC055717.3-201ENST00000622967 595 ntBASIC23.2■■□□□ 1.3
RC3H1Q5TC82 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RC3H1Q5TC82 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 IMP4-203ENST00000409935 958 ntTSL 5 BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 AC140113.2-201ENST00000604370 208 ntBASIC23.19■■□□□ 1.3
RC3H1Q5TC82 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 AL024508.2-201ENST00000607749 1894 ntBASIC23.19■■□□□ 1.3
RC3H1Q5TC82 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
RC3H1Q5TC82 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RC3H1Q5TC82 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
RC3H1Q5TC82 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC23.18■■□□□ 1.3
RC3H1Q5TC82 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC23.18■■□□□ 1.3
RC3H1Q5TC82 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
RC3H1Q5TC82 RPS2P1-201ENST00000434010 821 ntBASIC23.18■■□□□ 1.3
RC3H1Q5TC82 AL591424.1-201ENST00000442569 1213 ntBASIC23.18■■□□□ 1.3
RC3H1Q5TC82 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
RC3H1Q5TC82 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
RC3H1Q5TC82 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
RC3H1Q5TC82 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC23.18■■□□□ 1.3
RC3H1Q5TC82 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 POLI-202ENST00000406285 2030 ntTSL 2 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 SDHAP2-201ENST00000455183 2001 ntBASIC23.17■■□□□ 1.3
RC3H1Q5TC82 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 FUOM-202ENST00000368551 628 ntTSL 3 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 UPF3AP3-201ENST00000420996 769 ntBASIC23.17■■□□□ 1.3
RC3H1Q5TC82 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 PNMT-203ENST00000581428 677 ntTSL 2 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 AL356488.2-201ENST00000602755 427 ntBASIC23.17■■□□□ 1.3
RC3H1Q5TC82 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
RC3H1Q5TC82 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms