Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC140113.3-201ENST00000605663 199 ntBASIC16.52■□□□□ 0.24
H3F3AP84243 AC010240.3-201ENST00000607688 395 ntBASIC16.52■□□□□ 0.24
H3F3AP84243 AL023973.1-201ENST00000624619 620 ntBASIC16.52■□□□□ 0.24
H3F3AP84243 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.52■□□□□ 0.24
H3F3AP84243 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
H3F3AP84243 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
H3F3AP84243 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.52■□□□□ 0.23
H3F3AP84243 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
H3F3AP84243 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
H3F3AP84243 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
H3F3AP84243 AC005082.1-201ENST00000413042 2259 ntBASIC16.52■□□□□ 0.23
H3F3AP84243 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
H3F3AP84243 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
H3F3AP84243 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
H3F3AP84243 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.51■□□□□ 0.23
H3F3AP84243 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
H3F3AP84243 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.51■□□□□ 0.23
H3F3AP84243 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.51■□□□□ 0.23
H3F3AP84243 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.51■□□□□ 0.23
H3F3AP84243 RN7SL850P-201ENST00000579959 291 ntBASIC16.51■□□□□ 0.23
H3F3AP84243 MIR3917-201ENST00000580971 93 ntBASIC16.51■□□□□ 0.23
H3F3AP84243 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.51■□□□□ 0.23
H3F3AP84243 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
H3F3AP84243 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.51■□□□□ 0.23
H3F3AP84243 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.51■□□□□ 0.23
H3F3AP84243 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.51■□□□□ 0.23
H3F3AP84243 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
H3F3AP84243 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.51■□□□□ 0.23
H3F3AP84243 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
H3F3AP84243 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
H3F3AP84243 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
H3F3AP84243 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
H3F3AP84243 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
H3F3AP84243 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
H3F3AP84243 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
H3F3AP84243 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.5■□□□□ 0.23
H3F3AP84243 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
H3F3AP84243 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.5■□□□□ 0.23
H3F3AP84243 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
H3F3AP84243 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.5■□□□□ 0.23
H3F3AP84243 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.5■□□□□ 0.23
H3F3AP84243 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
H3F3AP84243 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.5■□□□□ 0.23
H3F3AP84243 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.5■□□□□ 0.23
H3F3AP84243 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.5■□□□□ 0.23
H3F3AP84243 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.5■□□□□ 0.23
H3F3AP84243 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.5■□□□□ 0.23
H3F3AP84243 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.5■□□□□ 0.23
H3F3AP84243 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
H3F3AP84243 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
H3F3AP84243 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.49■□□□□ 0.23
H3F3AP84243 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
H3F3AP84243 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
H3F3AP84243 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
H3F3AP84243 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
H3F3AP84243 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.49■□□□□ 0.23
H3F3AP84243 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
H3F3AP84243 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.49■□□□□ 0.23
H3F3AP84243 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
H3F3AP84243 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
H3F3AP84243 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
H3F3AP84243 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
H3F3AP84243 MIR149-201ENST00000384879 89 ntBASIC16.49■□□□□ 0.23
H3F3AP84243 RNF152P1-201ENST00000397754 604 ntBASIC16.49■□□□□ 0.23
H3F3AP84243 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
H3F3AP84243 TMPOP1-202ENST00000424642 1267 ntBASIC16.49■□□□□ 0.23
H3F3AP84243 TSPY5P-201ENST00000426936 936 ntBASIC16.49■□□□□ 0.23
H3F3AP84243 FAM210CP-201ENST00000445714 574 ntBASIC16.49■□□□□ 0.23
H3F3AP84243 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.49■□□□□ 0.23
H3F3AP84243 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
H3F3AP84243 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms