Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC140113.2-201ENST00000604370 208 ntBASIC19.73■□□□□ 0.75
COL4A4P53420 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 IGHV3-41-201ENST00000613121 348 ntBASIC19.73■□□□□ 0.75
COL4A4P53420 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
COL4A4P53420 AL691403.2-201ENST00000618460 490 ntBASIC19.73■□□□□ 0.75
COL4A4P53420 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.73■□□□□ 0.75
COL4A4P53420 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.73■□□□□ 0.75
COL4A4P53420 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A4P53420 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.72■□□□□ 0.75
COL4A4P53420 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.72■□□□□ 0.75
COL4A4P53420 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.72■□□□□ 0.75
COL4A4P53420 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.72■□□□□ 0.75
COL4A4P53420 RPL13AP23-201ENST00000480739 586 ntBASIC19.72■□□□□ 0.75
COL4A4P53420 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.72■□□□□ 0.75
COL4A4P53420 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.72■□□□□ 0.75
COL4A4P53420 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
COL4A4P53420 AC024563.2-201ENST00000603282 481 ntBASIC19.72■□□□□ 0.75
COL4A4P53420 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.72■□□□□ 0.75
COL4A4P53420 AC008556.1-201ENST00000610908 2040 ntBASIC19.72■□□□□ 0.75
COL4A4P53420 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.72■□□□□ 0.75
COL4A4P53420 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.72■□□□□ 0.75
COL4A4P53420 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.72■□□□□ 0.75
COL4A4P53420 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.72■□□□□ 0.75
COL4A4P53420 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
COL4A4P53420 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.72■□□□□ 0.75
COL4A4P53420 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.72■□□□□ 0.75
COL4A4P53420 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.72■□□□□ 0.75
COL4A4P53420 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A4P53420 AC005104.2-201ENST00000427818 678 ntBASIC19.71■□□□□ 0.75
COL4A4P53420 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A4P53420 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
COL4A4P53420 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A4P53420 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A4P53420 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A4P53420 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A4P53420 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A4P53420 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A4P53420 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A4P53420 AL109659.2-201ENST00000606809 1674 ntBASIC19.71■□□□□ 0.75
COL4A4P53420 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A4P53420 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A4P53420 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
COL4A4P53420 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A4P53420 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
COL4A4P53420 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A4P53420 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A4P53420 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.71■□□□□ 0.75
COL4A4P53420 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A4P53420 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.71■□□□□ 0.75
COL4A4P53420 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A4P53420 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A4P53420 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A4P53420 AC068587.9-201ENST00000641814 219 ntBASIC19.71■□□□□ 0.75
COL4A4P53420 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
COL4A4P53420 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A4P53420 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A4P53420 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.71■□□□□ 0.74
COL4A4P53420 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A4P53420 AC022898.2-201ENST00000616822 1312 ntBASIC19.7■□□□□ 0.74
COL4A4P53420 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
COL4A4P53420 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A4P53420 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
COL4A4P53420 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A4P53420 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
COL4A4P53420 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
COL4A4P53420 KRT89P-201ENST00000620027 1478 ntBASIC19.7■□□□□ 0.74
COL4A4P53420 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A4P53420 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A4P53420 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.7■□□□□ 0.74
COL4A4P53420 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A4P53420 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.7■□□□□ 0.74
COL4A4P53420 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A4P53420 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A4P53420 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A4P53420 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL4A4P53420 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL4A4P53420 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A4P53420 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A4P53420 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL4A4P53420 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A4P53420 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A4P53420 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A4P53420 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A4P53420 FGFR3P6-201ENST00000457012 610 ntBASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms