Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
COL18A1P39060 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC24.34■■□□□ 1.49
COL18A1P39060 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL18A1P39060 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL18A1P39060 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL18A1P39060 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL18A1P39060 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
COL18A1P39060 SDHAP2-201ENST00000455183 2001 ntBASIC24.34■■□□□ 1.49
COL18A1P39060 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL18A1P39060 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC24.34■■□□□ 1.49
COL18A1P39060 RPS2P1-201ENST00000434010 821 ntBASIC24.34■■□□□ 1.49
COL18A1P39060 HMGN1P19-201ENST00000436976 333 ntBASIC24.34■■□□□ 1.49
COL18A1P39060 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC24.34■■□□□ 1.49
COL18A1P39060 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC24.34■■□□□ 1.49
COL18A1P39060 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL18A1P39060 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC24.34■■□□□ 1.49
COL18A1P39060 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC24.34■■□□□ 1.49
COL18A1P39060 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
COL18A1P39060 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
COL18A1P39060 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
COL18A1P39060 AC009102.3-201ENST00000623118 1491 ntBASIC24.33■■□□□ 1.49
COL18A1P39060 AC125634.1-201ENST00000438758 1403 ntBASIC24.33■■□□□ 1.49
COL18A1P39060 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL18A1P39060 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL18A1P39060 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL18A1P39060 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL18A1P39060 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL18A1P39060 ABCD1P5-201ENST00000445663 754 ntBASIC24.33■■□□□ 1.49
COL18A1P39060 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
COL18A1P39060 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC24.33■■□□□ 1.49
COL18A1P39060 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC24.33■■□□□ 1.49
COL18A1P39060 AC025062.2-201ENST00000605477 670 ntBASIC24.33■■□□□ 1.49
COL18A1P39060 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL18A1P39060 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC24.33■■□□□ 1.49
COL18A1P39060 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL18A1P39060 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
COL18A1P39060 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
COL18A1P39060 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
COL18A1P39060 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
COL18A1P39060 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC24.32■■□□□ 1.48
COL18A1P39060 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC24.32■■□□□ 1.48
COL18A1P39060 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL18A1P39060 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL18A1P39060 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC24.32■■□□□ 1.48
COL18A1P39060 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC24.32■■□□□ 1.48
COL18A1P39060 DANCR-204ENST00000444958 709 ntTSL 3 BASIC24.32■■□□□ 1.48
COL18A1P39060 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL18A1P39060 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL18A1P39060 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL18A1P39060 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
COL18A1P39060 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC24.32■■□□□ 1.48
COL18A1P39060 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC24.32■■□□□ 1.48
COL18A1P39060 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
COL18A1P39060 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL18A1P39060 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
COL18A1P39060 ASL-204ENST00000395331 1538 ntTSL 5 BASIC24.32■■□□□ 1.48
COL18A1P39060 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC24.32■■□□□ 1.48
COL18A1P39060 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
COL18A1P39060 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
COL18A1P39060 AC009533.2-201ENST00000543664 586 ntBASIC24.31■■□□□ 1.48
COL18A1P39060 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC24.31■■□□□ 1.48
COL18A1P39060 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC24.31■■□□□ 1.48
COL18A1P39060 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
COL18A1P39060 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC24.31■■□□□ 1.48
COL18A1P39060 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
COL18A1P39060 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL18A1P39060 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC24.31■■□□□ 1.48
COL18A1P39060 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
COL18A1P39060 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL18A1P39060 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL18A1P39060 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC24.31■■□□□ 1.48
COL18A1P39060 FAM220CP-201ENST00000395253 831 ntBASIC24.31■■□□□ 1.48
COL18A1P39060 AC005104.2-201ENST00000427818 678 ntBASIC24.31■■□□□ 1.48
COL18A1P39060 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC24.31■■□□□ 1.48
COL18A1P39060 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC24.31■■□□□ 1.48
COL18A1P39060 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC24.31■■□□□ 1.48
COL18A1P39060 PNMT-203ENST00000581428 677 ntTSL 2 BASIC24.31■■□□□ 1.48
COL18A1P39060 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
COL18A1P39060 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL18A1P39060 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL18A1P39060 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC24.3■■□□□ 1.48
COL18A1P39060 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC24.3■■□□□ 1.48
COL18A1P39060 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC24.3■■□□□ 1.48
COL18A1P39060 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC24.3■■□□□ 1.48
COL18A1P39060 FAM197Y3-203ENST00000618346 717 ntBASIC24.3■■□□□ 1.48
COL18A1P39060 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC24.3■■□□□ 1.48
COL18A1P39060 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL18A1P39060 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC24.3■■□□□ 1.48
COL18A1P39060 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC24.3■■□□□ 1.48
COL18A1P39060 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
COL18A1P39060 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
COL18A1P39060 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
COL18A1P39060 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC24.29■■□□□ 1.48
COL18A1P39060 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC24.29■■□□□ 1.48
COL18A1P39060 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
COL18A1P39060 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC24.29■■□□□ 1.48
COL18A1P39060 AC009154.2-201ENST00000621177 724 ntBASIC24.29■■□□□ 1.48
COL18A1P39060 AC008735.5-201ENST00000623544 497 ntBASIC24.29■■□□□ 1.48
COL18A1P39060 AL139288.1-201ENST00000623748 933 ntBASIC24.29■■□□□ 1.48
COL18A1P39060 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms