Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.03■□□□□ 0.48
PCNAP12004 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.03■□□□□ 0.48
PCNAP12004 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.03■□□□□ 0.48
PCNAP12004 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
PCNAP12004 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PCNAP12004 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.02■□□□□ 0.48
PCNAP12004 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCNAP12004 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCNAP12004 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.02■□□□□ 0.48
PCNAP12004 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PCNAP12004 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCNAP12004 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.02■□□□□ 0.48
PCNAP12004 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCNAP12004 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCNAP12004 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.02■□□□□ 0.48
PCNAP12004 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCNAP12004 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PCNAP12004 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.02■□□□□ 0.48
PCNAP12004 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.02■□□□□ 0.48
PCNAP12004 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.02■□□□□ 0.48
PCNAP12004 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.02■□□□□ 0.48
PCNAP12004 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCNAP12004 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.02■□□□□ 0.48
PCNAP12004 AC008622.2-201ENST00000617006 1229 ntBASIC18.02■□□□□ 0.48
PCNAP12004 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.02■□□□□ 0.48
PCNAP12004 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PCNAP12004 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
PCNAP12004 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PCNAP12004 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
PCNAP12004 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
PCNAP12004 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.02■□□□□ 0.47
PCNAP12004 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PCNAP12004 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
PCNAP12004 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.02■□□□□ 0.47
PCNAP12004 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.01■□□□□ 0.47
PCNAP12004 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
PCNAP12004 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.01■□□□□ 0.47
PCNAP12004 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
PCNAP12004 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PCNAP12004 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
PCNAP12004 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
PCNAP12004 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.01■□□□□ 0.47
PCNAP12004 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 AP000525.1-201ENST00000608286 694 ntBASIC18.01■□□□□ 0.47
PCNAP12004 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
PCNAP12004 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.01■□□□□ 0.47
PCNAP12004 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.01■□□□□ 0.47
PCNAP12004 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PCNAP12004 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.01■□□□□ 0.47
PCNAP12004 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PCNAP12004 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 KRT17P2-201ENST00000300992 1314 ntBASIC18■□□□□ 0.47
PCNAP12004 AL357033.4-201ENST00000617703 1807 ntBASIC18■□□□□ 0.47
PCNAP12004 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18■□□□□ 0.47
PCNAP12004 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18■□□□□ 0.47
PCNAP12004 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18■□□□□ 0.47
PCNAP12004 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18■□□□□ 0.47
PCNAP12004 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18■□□□□ 0.47
PCNAP12004 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
PCNAP12004 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18■□□□□ 0.47
PCNAP12004 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18■□□□□ 0.47
PCNAP12004 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
PCNAP12004 BICD1-207ENST00000551848 1962 ntBASIC18■□□□□ 0.47
PCNAP12004 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms