Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TNFP01375 KRT89P-201ENST00000620027 1478 ntBASIC18.04■□□□□ 0.48
TNFP01375 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
TNFP01375 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.04■□□□□ 0.48
TNFP01375 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.04■□□□□ 0.48
TNFP01375 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.04■□□□□ 0.48
TNFP01375 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.04■□□□□ 0.48
TNFP01375 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.04■□□□□ 0.48
TNFP01375 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
TNFP01375 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TNFP01375 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TNFP01375 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
TNFP01375 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.04■□□□□ 0.48
TNFP01375 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.04■□□□□ 0.48
TNFP01375 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.03■□□□□ 0.48
TNFP01375 AC138932.1-201ENST00000534164 6830 ntBASIC18.03■□□□□ 0.48
TNFP01375 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.03■□□□□ 0.48
TNFP01375 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.03■□□□□ 0.48
TNFP01375 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.03■□□□□ 0.48
TNFP01375 DRAXINP1-201ENST00000437611 948 ntBASIC18.03■□□□□ 0.48
TNFP01375 GUSBP12-201ENST00000513727 720 ntBASIC18.03■□□□□ 0.48
TNFP01375 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
TNFP01375 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.03■□□□□ 0.48
TNFP01375 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.03■□□□□ 0.48
TNFP01375 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
TNFP01375 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.03■□□□□ 0.48
TNFP01375 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.03■□□□□ 0.48
TNFP01375 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TNFP01375 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.02■□□□□ 0.48
TNFP01375 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.02■□□□□ 0.48
TNFP01375 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.02■□□□□ 0.48
TNFP01375 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.02■□□□□ 0.48
TNFP01375 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.02■□□□□ 0.48
TNFP01375 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.02■□□□□ 0.48
TNFP01375 LINC00265-3P-201ENST00000447588 903 ntBASIC18.02■□□□□ 0.48
TNFP01375 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.02■□□□□ 0.48
TNFP01375 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 MYLKP1-201ENST00000509077 1580 ntBASIC18.02■□□□□ 0.48
TNFP01375 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.02■□□□□ 0.48
TNFP01375 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.02■□□□□ 0.48
TNFP01375 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TNFP01375 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.02■□□□□ 0.48
TNFP01375 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TNFP01375 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
TNFP01375 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
TNFP01375 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.02■□□□□ 0.47
TNFP01375 AC009102.3-201ENST00000623118 1491 ntBASIC18.01■□□□□ 0.47
TNFP01375 HCG11-201ENST00000411553 5696 ntBASIC18.01■□□□□ 0.47
TNFP01375 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TNFP01375 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TNFP01375 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TNFP01375 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TNFP01375 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TNFP01375 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TNFP01375 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
TNFP01375 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TNFP01375 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
TNFP01375 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.01■□□□□ 0.47
TNFP01375 AP000867.3-201ENST00000524675 377 ntBASIC18.01■□□□□ 0.47
TNFP01375 TPSP2-201ENST00000561760 610 ntBASIC18.01■□□□□ 0.47
TNFP01375 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.01■□□□□ 0.47
TNFP01375 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TNFP01375 AC008687.5-201ENST00000593746 558 ntBASIC18.01■□□□□ 0.47
TNFP01375 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TNFP01375 AL691432.3-201ENST00000621860 400 ntBASIC18.01■□□□□ 0.47
TNFP01375 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms