Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 MTDHP1-201ENST00000605323 784 ntBASIC16.17■□□□□ 0.18
NKX3-1Q99801 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.17■□□□□ 0.18
NKX3-1Q99801 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NKX3-1Q99801 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.16■□□□□ 0.18
NKX3-1Q99801 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 AC066615.1-201ENST00000640911 628 ntBASIC16.16■□□□□ 0.18
NKX3-1Q99801 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 KRT8P11-201ENST00000409686 1436 ntBASIC16.16■□□□□ 0.18
NKX3-1Q99801 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
NKX3-1Q99801 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NKX3-1Q99801 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 KRASP1-201ENST00000407852 552 ntBASIC16.15■□□□□ 0.18
NKX3-1Q99801 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 AC073648.6-201ENST00000641589 218 ntBASIC16.15■□□□□ 0.18
NKX3-1Q99801 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 OR6D1P-202ENST00000641007 5290 ntBASIC16.15■□□□□ 0.18
NKX3-1Q99801 AC008764.6-201ENST00000595909 2069 ntBASIC16.15■□□□□ 0.18
NKX3-1Q99801 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NKX3-1Q99801 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.15■□□□□ 0.18
NKX3-1Q99801 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.14■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms