Protein–RNA interactions for Protein: Q96NG5

ZNF558, Zinc finger protein 558, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558Q96NG5 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF558Q96NG5 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
ZNF558Q96NG5 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
ZNF558Q96NG5 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 AF238378.1-201ENST00000526806 358 ntBASIC19.64■□□□□ 0.73
ZNF558Q96NG5 AC064862.7-201ENST00000604520 867 ntBASIC19.64■□□□□ 0.73
ZNF558Q96NG5 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
ZNF558Q96NG5 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 TSPY12P-201ENST00000421279 868 ntBASIC19.63■□□□□ 0.73
ZNF558Q96NG5 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 AC008687.5-201ENST00000593746 558 ntBASIC19.63■□□□□ 0.73
ZNF558Q96NG5 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 AC023511.2-201ENST00000618803 211 ntBASIC19.63■□□□□ 0.73
ZNF558Q96NG5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ZNF558Q96NG5 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 BNIP3P18-201ENST00000593976 575 ntBASIC19.62■□□□□ 0.73
ZNF558Q96NG5 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 AL591684.3-201ENST00000605187 298 ntBASIC19.62■□□□□ 0.73
ZNF558Q96NG5 AC120114.3-201ENST00000611923 658 ntBASIC19.62■□□□□ 0.73
ZNF558Q96NG5 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.62■□□□□ 0.73
ZNF558Q96NG5 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 MIR149-201ENST00000384879 89 ntBASIC19.61■□□□□ 0.73
ZNF558Q96NG5 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 BX640515.1-201ENST00000617215 977 ntBASIC19.61■□□□□ 0.73
ZNF558Q96NG5 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 ANKRD20A8P-203ENST00000641373 517 ntBASIC19.61■□□□□ 0.73
ZNF558Q96NG5 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ZNF558Q96NG5 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms