Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 AC116562.4-202ENST00000641738 218 ntBASIC17.73■□□□□ 0.43
VMP1Q96GC9 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.73■□□□□ 0.43
VMP1Q96GC9 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VMP1Q96GC9 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 BICD1-207ENST00000551848 1962 ntBASIC17.72■□□□□ 0.43
VMP1Q96GC9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 AC090164.3-201ENST00000610780 2143 ntBASIC17.72■□□□□ 0.43
VMP1Q96GC9 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
VMP1Q96GC9 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VMP1Q96GC9 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 AL354751.1-201ENST00000412768 1863 ntBASIC17.71■□□□□ 0.43
VMP1Q96GC9 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 TSPY17P-201ENST00000450329 467 ntBASIC17.71■□□□□ 0.43
VMP1Q96GC9 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 AC005363.2-201ENST00000618631 242 ntBASIC17.71■□□□□ 0.43
VMP1Q96GC9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VMP1Q96GC9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
VMP1Q96GC9 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
VMP1Q96GC9 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
VMP1Q96GC9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.7■□□□□ 0.42
VMP1Q96GC9 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VMP1Q96GC9 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms